View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6325_low_8 (Length: 254)
Name: NF6325_low_8
Description: NF6325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6325_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11782170 - 11781926
Alignment:
| Q |
1 |
gcaaaaatcacccaaatatggaaaatcaaaaacatgagacaagagacaattgtttcatgtctcagtcccttgattacacatttatgcagattaaaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11782170 |
gcaaaaatcacccaaatatggaaaatcaaaaacatgagacaagagacaattgtttcatgtctcagtcccttgattacacatttatgcagattaaaaatat |
11782071 |
T |
|
| Q |
101 |
cctattacttctcttgttagattgaaactcttgagcgtttcattccaaacttatgtaagagtagctttagaatactttaaaattaaacttatttgcacc- |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11782070 |
cctattccttctcttgttagattgaaactcttgagcgtttcattccaaacttatgtaagagtagccttagaatactttaaaattaaacttatttgcacca |
11781971 |
T |
|
| Q |
200 |
aactataattgcctcttccaatcatacatttctcatatagtatta |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11781970 |
aactataattgcctcttccaatcatacatttctcatatagtatta |
11781926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 11781198 - 11781140
Alignment:
| Q |
136 |
cgtttcattccaaacttatgtaagagtagctttagaatactttaaaattaaacttattt |
194 |
Q |
| |
|
||||||||| | |||||||||| ||||||| || |||||||| ||| |||||||||||| |
|
|
| T |
11781198 |
cgtttcatttctaacttatgtaggagtagccttggaatacttcaaagttaaacttattt |
11781140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University