View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_high_10 (Length: 386)
Name: NF6327_high_10
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Complemental strand, 7401028 - 7400658
Alignment:
| Q |
10 |
gcacagagagaagataaacatttttgtattatcctaatagtcatcatggcaatacacgattataagaactgacattgagtgtggaaagaaccactcttat |
109 |
Q |
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| T |
7401028 |
gcacagagagaagataaacatttttgtattatcctaatagtcatcatggcaatacacgattataagaactgacattgagtgtggaaagaaccactcttat |
7400929 |
T |
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| Q |
110 |
cccagtcatgctaaactgatatt--------tcacatatgctccacaaactaataaagtttatacttattattttccaattcatgtaactgccatgttgc |
201 |
Q |
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| T |
7400928 |
cccagtcatgctaaactgatattctgatatttcacatatgctccacaaactaataaagtttatacttattattttccaattcatgtaactgccatgttgc |
7400829 |
T |
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| Q |
202 |
aatggctatagataaacatcacaggaataacaagcatacataattcctaactacataaataacatgatcgtggcagtttcctgatactatgcggaaatag |
301 |
Q |
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| T |
7400828 |
aatggctatagataaacatcacaggaataacaagcatacataattcctaactacataaataacatgatcgtggcagtttcctgatactatgcggaaatag |
7400729 |
T |
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| Q |
302 |
ttttgccaaaatcagaagatagattcgcaacttcatgataatatatttacacaaattcaactagcttattg |
372 |
Q |
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| T |
7400728 |
ttttgccaaaatcagaagatagattcgcaacttcatgataatatatttacacaaattcaactagcttattg |
7400658 |
T |
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