View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_high_18 (Length: 293)
Name: NF6327_high_18
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5040698 - 5040960
Alignment:
| Q |
18 |
cattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgat |
117 |
Q |
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| T |
5040698 |
cattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacttattctttctcttctatgccttgcagcaacagtttgaggatcatttgat |
5040797 |
T |
|
| Q |
118 |
atctttacattcttcctcttaggcnnnnnnncaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttcct |
217 |
Q |
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| T |
5040798 |
atctttacattcttcctcttcggctttttttcaattacatcaatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttcct |
5040897 |
T |
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| Q |
218 |
tcatttgtgctattgcttctggatcagcttcttcaattgaagaagaacagcacatcgatgatg |
280 |
Q |
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| T |
5040898 |
tcatttgtgctattgcttctggatcagcttcttcaattgaagaagaacagcacattgatgatg |
5040960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 43187029 - 43187247
Alignment:
| Q |
26 |
ttccaccaggtacaatcttttgcaaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttac |
125 |
Q |
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| T |
43187029 |
ttccaccaggaacaatcttctgcaagactctaatcctttcacttattctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaac |
43187128 |
T |
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| Q |
126 |
attcttcctcttaggcnnnnnnncaattacatcaatatcatccattccaaaat---tcactggtctaaatgctgctgctctatacatcatttccttcatt |
222 |
Q |
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| T |
43187129 |
attcttccttttaggctt--------ttccatca----cttccaaacccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatt |
43187216 |
T |
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| Q |
223 |
tgtgctattgcttctggatcagcttcttcaa |
253 |
Q |
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| T |
43187217 |
tgtgctattgcctctggatcaggctcttcaa |
43187247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 6259664 - 6259553
Alignment:
| Q |
26 |
ttccaccaggtac-aatcttttgcaaaaccctaattctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatcttta |
124 |
Q |
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||||||||||||| ||||||| | || | ||| |||||||||| |||||||| |||||||||||||| || ||| |||||||||| ||||| ||||| | |
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| T |
6259664 |
ttccaccaggtactaatcttt-gtaatatccttattctttcactaattctttctcttctatgtcttgctgctacactttgtggatcctttgaaatcttca |
6259566 |
T |
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| Q |
125 |
cattcttcctctt |
137 |
Q |
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||||||| ||||| |
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| T |
6259565 |
cattctttctctt |
6259553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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