View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_high_19 (Length: 267)

Name: NF6327_high_19
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_high_19
NF6327_high_19
[»] chr4 (12 HSPs)
chr4 (1-259)||(33334130-33334377)
chr4 (15-205)||(45976128-45976320)
chr4 (21-128)||(10317103-10317208)
chr4 (58-128)||(8892660-8892729)
chr4 (21-114)||(53722019-53722110)
chr4 (76-127)||(3770909-3770960)
chr4 (61-128)||(31670142-31670208)
chr4 (21-100)||(43683731-43683808)
chr4 (76-127)||(44147090-44147141)
chr4 (76-127)||(44151625-44151676)
chr4 (21-128)||(27186154-27186263)
chr4 (6-35)||(53785842-53785871)
[»] chr6 (11 HSPs)
chr6 (6-199)||(17159594-17159789)
chr6 (9-117)||(7888209-7888317)
chr6 (147-260)||(7888095-7888210)
chr6 (7-133)||(17163625-17163752)
chr6 (21-128)||(17096314-17096419)
chr6 (58-128)||(17895763-17895832)
chr6 (3-162)||(21417106-21417265)
chr6 (2-128)||(8320082-8320204)
chr6 (21-128)||(8315543-8315649)
chr6 (58-128)||(14531827-14531896)
chr6 (59-114)||(17779964-17780018)
[»] chr2 (9 HSPs)
chr2 (7-199)||(29767938-29768132)
chr2 (7-193)||(26440372-26440559)
chr2 (6-73)||(22558544-22558611)
chr2 (21-128)||(8050851-8050956)
chr2 (61-128)||(12999504-12999570)
chr2 (76-127)||(36670570-36670621)
chr2 (76-127)||(36675118-36675169)
chr2 (7-102)||(27403696-27403791)
chr2 (21-128)||(8055404-8055509)
[»] chr7 (10 HSPs)
chr7 (7-167)||(13828101-13828262)
chr7 (6-115)||(8674961-8675068)
chr7 (7-128)||(733706-733826)
chr7 (21-128)||(35705646-35705752)
chr7 (76-127)||(7940122-7940173)
chr7 (76-127)||(7944675-7944726)
chr7 (21-119)||(47419627-47419723)
chr7 (21-114)||(27761409-27761500)
chr7 (76-128)||(22901221-22901273)
chr7 (76-114)||(27756911-27756949)
[»] chr5 (16 HSPs)
chr5 (6-201)||(33823882-33824070)
chr5 (43-128)||(20830368-20830452)
chr5 (58-128)||(32486025-32486094)
chr5 (63-128)||(19502362-19502426)
chr5 (21-128)||(30695305-30695410)
chr5 (58-128)||(26336845-26336915)
chr5 (43-128)||(20808680-20808764)
chr5 (37-126)||(43384980-43385067)
chr5 (76-127)||(7099413-7099464)
chr5 (76-127)||(7103982-7104033)
chr5 (76-127)||(12018798-12018849)
chr5 (76-127)||(12023356-12023407)
chr5 (76-127)||(16794175-16794226)
chr5 (76-127)||(16798736-16798787)
chr5 (21-114)||(40371789-40371880)
chr5 (21-119)||(10277216-10277312)
[»] chr8 (13 HSPs)
chr8 (21-128)||(42234734-42234839)
chr8 (21-169)||(41949814-41949962)
chr8 (21-128)||(33071930-33072035)
chr8 (21-128)||(28644574-28644679)
chr8 (21-127)||(43807524-43807628)
chr8 (21-127)||(43812083-43812187)
chr8 (76-127)||(197723-197774)
chr8 (76-127)||(202241-202292)
chr8 (76-127)||(312560-312611)
chr8 (76-127)||(317078-317129)
chr8 (76-128)||(30405860-30405912)
chr8 (21-128)||(30410369-30410474)
chr8 (44-87)||(31474662-31474704)
[»] chr3 (12 HSPs)
chr3 (21-128)||(9697598-9697705)
chr3 (58-128)||(43547772-43547842)
chr3 (10-106)||(53353037-53353131)
chr3 (76-115)||(755895-755934)
chr3 (21-128)||(11004443-11004548)
chr3 (61-128)||(21847162-21847228)
chr3 (61-128)||(21850252-21850318)
chr3 (76-127)||(54171963-54172014)
chr3 (4-167)||(9105272-9105433)
chr3 (76-127)||(54167383-54167434)
chr3 (81-115)||(755824-755858)
chr3 (21-119)||(39399171-39399267)
[»] scaffold0440 (2 HSPs)
scaffold0440 (58-127)||(7555-7623)
scaffold0440 (76-127)||(3047-3098)
[»] chr1 (4 HSPs)
chr1 (4-114)||(16588532-16588638)
chr1 (21-126)||(43591863-43591966)
chr1 (21-119)||(10504448-10504544)
chr1 (76-128)||(39793896-39793948)
[»] scaffold0044 (2 HSPs)
scaffold0044 (76-127)||(44904-44955)
scaffold0044 (76-127)||(49484-49535)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 33334377 - 33334130
Alignment:
Q  1 tgttattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  33334377 tgttattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgtt------------a 33334290  T
Q  101 caagttggttagagtttagaaaataagagttagggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgttataagttcattccttgtacaa 199  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334289 caagttggttagagtttagaaaataagagttagggttgttactttacttgtgcttcaagtaacctaacacatgcttgttataagttcattccttgtacaa 33334190  T
Q  200 ttttcatatctcaataatacatttcattttatcaattctattcacttacgctttcttctc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334189 ttttcatatctcaataatacatttcattttatcaattctattcacttacgctttcttctc 33334130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 45976320 - 45976128
Alignment:
Q  15 tagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 114  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||||||||  ||||||    
T  45976320 tagtagttaattcaagtttacattagtggtaatcatgcttagttgattaatcacatcttg-ttttagtttgttttgaagtttgttacaagttttttagag 45976222  T
Q  115 -tttagaaaataagagttagggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaattttca 205  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  45976221 ttttagaaaataagagttagggttgttactttacttgtgcttcaagtaacctaacacttgcttgtatataagctcattccttgtacatttttca 45976128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 10317208 - 10317103
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  ||||| |||||||   | || ||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||| ||||     
T  10317208 ttaattcaagtttagtttagttataatcacaatcag-tgattaatcacactttg-ttgtagtttgttatgaagtttgttacaagtttgttagaggttagc 10317111  T
Q  121 aaataaga 128  Q
    ||||||||    
T  10317110 aaataaga 10317103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 8892729 - 8892660
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||| || ||||||| |||| ||||||||    
T  8892729 tgattaatcacattttg-ttttagtttgttatgaagtttgttacaaatttgttagagattagcaaataaga 8892660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 53722019 - 53722110
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 114  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| |||||||    
T  53722019 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagag 53722110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 3770909 - 3770960
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  3770909 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 3770960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 31670142 - 31670208
Alignment:
Q  61 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  31670142 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 31670208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 43683808 - 43683731
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgtta 100  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||| |||||||||||| ||||||||||||    
T  43683808 ttaattcaagtttattttagtgataatcacaatcag-tgattaatcacactttg-ttttagtttgttatgaagtttgtta 43683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 44147090 - 44147141
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44147090 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44147141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 44151625 - 44151676
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44151625 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44151676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 27186154 - 27186263
Alignment:
Q  21 ttaattcaagtttacatt-agtgataatcatgtttagttgattaatcacactttgatttt-agttt-gttttgaagtttgttacaagttggttagagttt 117  Q
    ||||||||||||||  || |||||||||||   ||||| ||||||||||| |||| |||| ||||| ||| |||||||||||||||||| ||||||| ||    
T  27186154 ttaattcaagtttagttttagtgataatcacaattagt-gattaatcacattttgttttttagttttgttatgaagtttgttacaagtttgttagaggtt 27186252  T
Q  118 agaaaataaga 128  Q
    || ||||||||    
T  27186253 agcaaataaga 27186263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 53785842 - 53785871
Alignment:
Q  6 ttgttagtttagttgttaattcaagtttac 35  Q
    ||||||||||||||||||||||||||||||    
T  53785842 ttgttagtttagttgttaattcaagtttac 53785871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 17159594 - 17159789
Alignment:
Q  6 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagt 105  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |||| |||||| |||||||||||||||| |||||||||||||    
T  17159594 ttgttagtttagttgataattcaagtttagattagtgataatcatgattagttgattgatcatactttg-ttttagtttgttttgacgtttgttacaagt 17159692  T
Q  106 tggttag--agtttagaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 199  Q
    |||||||  | ||||| |||||||||| || ||||||  |||||||||||||||||||| |||||| |||| || |||||| |||||||||||||||    
T  17159693 tggttagaaattttaggaaataagagtcagagttgttacttacttgtgcttcaagtaacataacacttgctcgtatataagctcattccttgtacaa 17159789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 7888317 - 7888209
Alignment:
Q  9 ttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttgg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  7888317 ttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaactttg 7888218  T
Q  109 ttagagttt 117  Q
    |||||||||    
T  7888217 ttagagttt 7888209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 147 - 260
Target Start/End: Complemental strand, 7888210 - 7888095
Alignment:
Q  147 ttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaatttt-catatctcaataatacatttcattttatcaattctattcac 244  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  7888210 ttgtgcttcaagtaacctaacacatgcttgtatataagctcattccttgtacaatttttcatatctcaataatacaattcattttatcaattctattcac 7888111  T
Q  245 ttacgctttcttctca 260  Q
    || | |||||||||||    
T  7888110 ttgctctttcttctca 7888095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 17163625 - 17163752
Alignment:
Q  7 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 106  Q
    |||||||||||||| ||||||||||||| ||||||||| ||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  17163625 tgttagtttagttgataattcaagtttagattagtgatgatcgtgattagttgattgatcacactttg-ttttagtttgttttgaagtttgttacaagtt 17163723  T
Q  107 ggttaga--gtttagaaaataagagttag 133  Q
    |||||||   ||||| |||||||||||||    
T  17163724 ggttagaagttttaggaaataagagttag 17163752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 17096419 - 17096314
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  17096419 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 17096322  T
Q  121 aaataaga 128  Q
    | ||||||    
T  17096321 agataaga 17096314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 17895832 - 17895763
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  17895832 tgattaatcacatttt-attttagtttgttctgaagtttgttacaagtttgttagaggttagcaaataaga 17895763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 21417265 - 21417106
Alignment:
Q  3 ttattgttagttt-agttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttac 101  Q
    ||||||||||||| ||||| ||||||||||| |  |||||  |||||||  |||| ||||| || |||||||| |||||||| |||||||||||||||||    
T  21417265 ttattgttagttttagttgataattcaagtt-agtttagtattaatcataattagctgattgattacactttg-ttttagtt-gttttgaagtttgttac 21417169  T
Q  102 aagttggttaga--gtttagaaaataagagttagggttgttctttacttgtgcttcaagtaac 162  Q
    |||||||||| |   ||||  ||||||| ||||  | ||||  ||||||||||||||||||||    
T  21417168 aagttggttacaagctttaagaaataagggttatagctgttacttacttgtgcttcaagtaac 21417106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 8320204 - 8320082
Alignment:
Q  2 gttattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttac 101  Q
    |||||||||||||| ||| ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||    
T  8320204 gttattgttagttt-gtt-ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacaatatg-ttttagtttgttatgaagtttgttac 8320109  T
Q  102 aagttggttagagtttagaaaataaga 128  Q
    ||||| ||||||| |||| | ||||||    
T  8320108 aagtttgttagaggttagtagataaga 8320082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 8315649 - 8315543
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | |||||||||  ||  |||||||||||| |||||||||||||||||| ||||||| ||||     
T  8315649 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgttagaggttagt 8315551  T
Q  121 aaataaga 128  Q
    | ||||||    
T  8315550 agataaga 8315543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 14531896 - 14531827
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||| |||||||| ||| |||||||||||||| ||| ||||||| |||| ||||||||    
T  14531896 tgattaatcacattttg-ttttagttcgttatgaagtttgttacaggtttgttagaggttagcaaataaga 14531827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 17779964 - 17780018
Alignment:
Q  59 gattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 114  Q
    ||||||||||| |||| |||||||||||| |||||||||||| ||||| |||||||    
T  17779964 gattaatcacattttg-ttttagtttgttatgaagtttgttaaaagtttgttagag 17780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 29767938 - 29768132
Alignment:
Q  7 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 106  Q
    |||||||||||||| |||||||||||||  ||||||||||||||| ||| |||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  29767938 tgttagtttagttgataattcaagtttagtttagtgataatcatgattaattgattgatcacactttg-ttttagtttgttttaaagtttgttacaagtt 29768036  T
Q  107 ggttaga--gtttagaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 199  Q
    ||||| |   ||||| ||||||||||||| ||||||  |||||||||||||||||||| |||||  ||||||| |||||| |||||||||||||||    
T  29768037 ggttataagttttaggaaataagagttagagttgttacttacttgtgcttcaagtaacataacaattgcttgtatataagctcattccttgtacaa 29768132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 26440372 - 26440559
Alignment:
Q  7 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 106  Q
    |||||||||| | | |||||||| ||||  ||||| ||||||||| ||| |||||| |||||| ||| ||||||||||||||| ||||| ||||||||||    
T  26440372 tgttagtttaatggataattcaaatttagtttagtaataatcatgattatttgattgatcacatttt-attttagtttgttttaaagtt-gttacaagtt 26440469  T
Q  107 ggttaga--gtttagaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattcctt 193  Q
    |||||||   |||||  |||||||| ||  || |||  |||||||||||||||||||| |||||| ||||||| |||||| |||||||||    
T  26440470 ggttagaagctttagcgaataagagctaaagtagttacttacttgtgcttcaagtaacataacacttgcttgtatataagctcattcctt 26440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 22558611 - 22558544
Alignment:
Q  6 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacacttt 73  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  22558611 ttgttagtttaattgataattcaagtttacattaatgataatcatgttttgttggttaatcacacttt 22558544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 8050851 - 8050956
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | | ||||||||||||| |||||||||||||||||| ||||||| ||||     
T  8050851 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattct-attttagtttgttatgaagtttgttacaagtttgttagaggttagt 8050948  T
Q  121 aaataaga 128  Q
    | ||||||    
T  8050949 agataaga 8050956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 12999570 - 12999504
Alignment:
Q  61 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  12999570 ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 12999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 36670570 - 36670621
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  36670570 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 36670621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 36675118 - 36675169
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  36675118 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 36675169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 27403791 - 27403696
Alignment:
Q  7 tgttagttt-agttgttaattcaagtttacattagtgataatcatgtttagttg-attaatcacactttgattttagtttgttttgaagtttgttaca 102  Q
    ||||||||| ||||| ||||||||||| |  |||||| |||||||| |||| || ||| || |||||||| |||||||||||||||||||||||||||    
T  27403791 tgttagtttcagttgataattcaagtt-agtttagtgttaatcatgattagctggattgattacactttg-ttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 8055404 - 8055509
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | | ||||||||||||| ||||||||||| |||||| ||||||| ||||     
T  8055404 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattct-attttagtttgttatgaagtttgttgcaagtttgttagaggttagt 8055501  T
Q  121 aaataaga 128  Q
    | ||||||    
T  8055502 agataaga 8055509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 13828262 - 13828101
Alignment:
Q  7 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 106  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||| ||||||||||||||||||    
T  13828262 tgttagtctagttgttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcatttt-gtttgttctgaagtttgttacaagtt 13828164  T
Q  107 ggttagagtttagaaaataagagttagggt-tgtt-ctttacttgtgcttcaagtaacctaac 167  Q
     |||||||| ||   ||||| ||||||||| |||| | || |||||||||||||  |||||||    
T  13828163 tgttagagtgtatctaataatagttagggtctgttacattgcttgtgcttcaagctacctaac 13828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 8674961 - 8675068
Alignment:
Q  6 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagt 105  Q
    |||||||||| |||  ||||||||||||| ||||||||||||||||||||  || ||||||||||||     |||||||||||||||||||||||| ||     
T  8674961 ttgttagttttgttactaattcaagtttagattagtgataatcatgtttaaatggttaatcacactt--cagttagtttgttttgaagtttgttactagg 8675058  T
Q  106 tggttagagt 115  Q
    | ||||||||    
T  8675059 ttgttagagt 8675068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 733826 - 733706
Alignment:
Q  7 tgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 106  Q
    ||||||||| |||  ||||||||||||| ||||||||||||||||||||  || |||||||||  || |  |||||||||| |||| |||||||||| ||    
T  733826 tgttagttttgttagtaattcaagtttagattagtgataatcatgtttaaatggttaatcacatattca-gttagtttgttatgaaatttgttacaattt 733728  T
Q  107 ggttagagtttagaaaataaga 128  Q
     ||||||| |||| ||||||||    
T  733727 tgttagaggttagcaaataaga 733706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 35705646 - 35705752
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttt-tgaagtttgttacaagttggttagagtttag 119  Q
    ||||||||||||||  |||||||||||||   | || |||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||| ||||    
T  35705646 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacattttg-ttttagtttgtttatggagtttgttacaagtttgttagaggttag 35705743  T
Q  120 aaaataaga 128  Q
     ||||||||    
T  35705744 caaataaga 35705752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 7940173 - 7940122
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7940173 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7940122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 7944726 - 7944675
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7944726 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7944675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 47419723 - 47419627
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 119  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| ||||||||||||||||||  |||||| ||||    
T  47419723 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttcttagaggttag 47419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 27761409 - 27761500
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 114  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| |||||||    
T  27761409 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagag 27761500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 22901221 - 22901273
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  22901221 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 22901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 27756911 - 27756949
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagag 114  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  27756911 ttttagtttgttatgaagtttgttacaagtttgttagag 27756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 33823882 - 33824070
Alignment:
Q  6 ttgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagt 105  Q
    |||||| |||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||||| | |||             ||||||||||||||    
T  33823882 ttgttaatttagttgttaattcatgtttacattaatgacaatcacgattagttgattaatcacacttcgtttt-------------agtttgttacaagt 33823968  T
Q  106 tggttagag--tttagaaaataagagtta--gggttgtt-ctttacttgtgcttcaagtaacctaacacatgcttgt-tataagttcattccttgtacaa 199  Q
    ||||||||   ||||||||||||||||||  |||||||| |||||||| ||||||||||||| |||||| ||||||| |||||| |||||||||||||||    
T  33823969 tggttagaagttttagaaaataagagttatagggttgttactttacttctgcttcaagtaacataacacttgcttgtatataagctcattccttgtacaa 33824068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 20830452 - 20830368
Alignment:
Q  43 ataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||||||||||||| ||||||||| || | ||| |||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  20830452 ataatcatgtttagttggttaatcacatttag-tttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataaga 20830368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 32486094 - 32486025
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  32486094 tgattaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataaga 32486025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 19502362 - 19502426
Alignment:
Q  63 aatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  19502362 aatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagaaaataaga 19502426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 30695305 - 30695410
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  30695305 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagt 30695402  T
Q  121 aaataaga 128  Q
    | ||||||    
T  30695403 atataaga 30695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 26336915 - 26336845
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||| |||||||||||| ||| |||||||||| ||| ||||||| |||| ||||||||    
T  26336915 tgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttgttagaggttagcaaataaga 26336845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 20808764 - 20808680
Alignment:
Q  43 ataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||||||||||||| ||||||||| |||  ||| |||||||| ||||||| |||||||||| ||||||| |||  ||||||||    
T  20808764 ataatcatgtttagttggttaatcaca-tttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataaga 20808680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 43384980 - 43385067
Alignment:
Q  37 ttagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataa 126  Q
    ||||||||||||||  ||||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||  |||| ||||||    
T  43384980 ttagtgataatcataattagtgg-ttaatcaca-tttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataa 43385067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 7099464 - 7099413
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7099464 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7099413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 7104033 - 7103982
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7104033 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7103982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 12018798 - 12018849
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  12018798 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 12018849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 12023356 - 12023407
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  12023356 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 12023407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 16794175 - 16794226
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  16794175 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 16794226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 16798736 - 16798787
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  16798736 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 16798787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 40371880 - 40371789
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagag 114  Q
    ||||||||||||||  |||||||||||||   | ||  ||||||||||| |||| |||||||||||| ||||| |||||||||||| |||||||    
T  40371880 ttaattcaagtttagtttagtgataatcacaatcaga-gattaatcacattttg-ttttagtttgttatgaagattgttacaagtttgttagag 40371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 10277216 - 10277312
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 119  Q
    ||||||||||||||  |||||||||||||   ||||| | ||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  10277216 ttaattcaagtttagtttagtgataatcacaattagtgg-ttaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 42234839 - 42234734
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  42234839 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacactttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 42234742  T
Q  121 aaataaga 128  Q
    ||||||||    
T  42234741 aaataaga 42234734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 41949814 - 41949962
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttaga--gttta 118  Q
    |||||||||| |||  |||||||||||||   | || |||||||||||||| || |||||||||||||||||||||||||||||||||||| |   ||||    
T  41949814 ttaattcaagcttagtttagtgataatcacaatcag-tgattaatcacactctg-ttttagtttgttttgaagtttgttacaagttggttacaagtttta 41949911  T
Q  119 gaaaataagagttagggttgttctttacttgtgcttcaagtaacctaacac 169  Q
      ||||||| ||||  ||||||  ||||||||||||||||| || ||||||    
T  41949912 agaaataagggttatagttgttacttacttgtgcttcaagtgacataacac 41949962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 33071930 - 33072035
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | || ||||||||||||||||  |||||||||||| |||||||||||||||||| ||| ||| ||||     
T  33071930 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcacacttt-cttttagtttgttatgaagtttgttacaagtttgttggaggttagc 33072027  T
Q  121 aaataaga 128  Q
    ||||||||    
T  33072028 aaataaga 33072035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 28644574 - 28644679
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||     
T  28644574 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 28644671  T
Q  121 aaataaga 128  Q
    | ||||||    
T  28644672 agataaga 28644679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 43807628 - 43807524
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  43807628 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 43807531  T
Q  121 aaataag 127  Q
    |||||||    
T  43807530 aaataag 43807524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 43812187 - 43812083
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || |||||||||||| |||||||||||||||||| ||||||| ||||     
T  43812187 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagc 43812090  T
Q  121 aaataag 127  Q
    |||||||    
T  43812089 aaataag 43812083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 197774 - 197723
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  197774 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 197723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 202292 - 202241
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  202292 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 312611 - 312560
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  312611 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 312560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 317129 - 317078
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  317129 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 317078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 30405912 - 30405860
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  30405912 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataaga 30405860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 30410474 - 30410369
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| | ||||||||| | || ||||| |||||| |||||||||||||||||| ||||||| ||||     
T  30410474 ttaattcaagtttagtttagtgataatcacaatcagtgg-ttaatcacattctg-ttttaatttgttatgaagtttgttacaagtttgttagaggttagt 30410377  T
Q  121 aaataaga 128  Q
    | ||||||    
T  30410376 agataaga 30410369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 31474704 - 31474662
Alignment:
Q  44 taatcatgtttagttgattaatcacactttgattttagtttgtt 87  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  31474704 taatcatgtttagttggttaatcaca-tttgattttagtttgtt 31474662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 9697598 - 9697705
Alignment:
Q  21 ttaattcaagtttacatt-agtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 119  Q
    ||||||||||||||  || |||||||||||   ||||| ||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| ||||    
T  9697598 ttaattcaagtttagttttagtgataatcacaattagt-gattaatcacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttag 9697696  T
Q  120 aaaataaga 128  Q
     ||||||||    
T  9697697 caaataaga 9697705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 43547772 - 43547842
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||  ||||||||    
T  43547772 tgattaattacattttgtttttagtttgttatgaagtttgttacaagtttgttagaggttaacaaataaga 43547842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 53353131 - 53353037
Alignment:
Q  10 tagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagtt 106  Q
    ||||||||||| ||||||||||| | ||||||| |||||||| |||| ||||| || ||| |||| |||||||||  ||| ||||||||||||||||    
T  53353131 tagtttagttggtaattcaagtt-agattagtgttaatcatgattagatgattgattacattttg-ttttagtttaatttaaagtttgttacaagtt 53353037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 755895 - 755934
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagt 115  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  755895 ttttagtttgttttgaagtttgttacaagtttgttagagt 755934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 11004548 - 11004443
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | ||| || |||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||| ||||     
T  11004548 ttaattcaagtttagtttagtgataatcacaatcagt-gaataatcacattttg-ttttagcttgttatgaagattgttacaagtttgttagaggttagc 11004451  T
Q  121 aaataaga 128  Q
    ||||||||    
T  11004450 aaataaga 11004443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 21847162 - 21847228
Alignment:
Q  61 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  21847162 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 21847228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 21850252 - 21850318
Alignment:
Q  61 ttaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  21850252 ttaatcacagtttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcagataaga 21850318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 54172014 - 54171963
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  54172014 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 54171963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 9105272 - 9105433
Alignment:
Q  4 tattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaa 103  Q
    |||||||||||| ||| ||||||||||||||  |||||||||||||   | | | ||||||||||| |||| ||| |||||||| |||||| ||||||||    
T  9105272 tattgttagttt-gtt-ttaattcaagtttagtttagtgataatcacaatcaat-gattaatcacattttgcttt-agtttgttatgaagtatgttacaa 9105367  T
Q  104 gttggttagagtttagaaaataagagttag-ggttgtt-ctttacttgtgcttcaagtaacctaac 167  Q
    ||| ||||||| |||  ||||||||  ||| | ||||| | || ||||||||||||| ||||||||    
T  9105368 gtttgttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaac 9105433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 54167434 - 54167383
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||  |||||||    
T  54167434 ttttagtttgttatgaagtttgttacaagtttgttagaggttaccaaataag 54167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 755824 - 755858
Alignment:
Q  81 gtttgttttgaagtttgttacaagttggttagagt 115  Q
    |||||||||||||||||||||||||| ||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagagt 755858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 39399267 - 39399171
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 119  Q
    ||||||||||||||  |||||||||||||   ||||| | ||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  39399267 ttaattcaagtttagtttagtgataatcacaattagtgg-ttaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 39399171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 7555 - 7623
Alignment:
Q  58 tgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  7555 tgattaatcacaatttg-ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 7623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 3047 - 3098
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  3047 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 3098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 16588638 - 16588532
Alignment:
Q  4 tattgttagtttagttgttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaa 103  Q
    |||||||||||| ||| ||||||||||||||  |||||||||||||   | ||| | ||||||||| |||| |||||||||||| |||||||||||||||    
T  16588638 tattgttagttt-gtt-ttaattcaagtttagtttagtgataatcacaataagtgg-ttaatcacattttg-ttttagtttgttatgaagtttgttacaa 16588543  T
Q  104 gttggttagag 114  Q
    ||| |||||||    
T  16588542 gtttgttagag 16588532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 43591966 - 43591863
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttaga 120  Q
    ||||||||||||||  |||||||||||||   | || ||||||||| |||||| ||||||||||||| |||||||||||||||  | ||||||| ||||     
T  43591966 ttaattcaagtttagtttagtgataatcacaatcag-tgattaatcgcacttt-attttagtttgttatgaagtttgttacaatattgttagaggttagc 43591869  T
Q  121 aaataa 126  Q
    ||||||    
T  43591868 aaataa 43591863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 10504448 - 10504544
Alignment:
Q  21 ttaattcaagtttacattagtgataatcatgtttagttgattaatcacactttgattttagtttgttttgaagtttgttacaagttggttagagtttag 119  Q
    ||||||||||||||  |||||||||||||   ||||| ||||||||||| || ||||  |||||||| |||| ||||||||||||| ||||||| ||||    
T  10504448 ttaattcaagtttagtttagtgataatcacaattagt-gattaatcacatttagattc-agtttgttatgaattttgttacaagttagttagagattag 10504544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 39793896 - 39793948
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataaga 128  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| | ||||||    
T  39793896 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataaga 39793948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 44955 - 44904
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  44955 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 44904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 49535 - 49484
Alignment:
Q  76 ttttagtttgttttgaagtttgttacaagttggttagagtttagaaaataag 127  Q
    |||||||||||| |||||||||||||||||| ||||||| |||| |||||||    
T  49535 ttttagtttgttatgaagtttgttacaagtttgttagaggttagcaaataag 49484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University