View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_high_24 (Length: 249)

Name: NF6327_high_24
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_high_24
NF6327_high_24
[»] chr2 (2 HSPs)
chr2 (18-191)||(12072155-12072330)
chr2 (191-249)||(12072415-12072473)
[»] chr8 (3 HSPs)
chr8 (192-249)||(7773491-7773548)
chr8 (192-249)||(7790131-7790188)
chr8 (192-249)||(7810717-7810774)
[»] chr5 (1 HSPs)
chr5 (192-248)||(524938-524994)
[»] chr6 (5 HSPs)
chr6 (192-249)||(15035870-15035927)
chr6 (192-238)||(31234829-31234875)
chr6 (192-238)||(31243966-31244012)
chr6 (192-245)||(1722243-1722296)
chr6 (192-246)||(32055979-32056033)
[»] scaffold0482 (1 HSPs)
scaffold0482 (192-249)||(1725-1782)
[»] chr7 (1 HSPs)
chr7 (192-237)||(2445875-2445920)
[»] chr3 (3 HSPs)
chr3 (192-248)||(35202808-35202864)
chr3 (192-249)||(4207443-4207500)
chr3 (208-249)||(21660428-21660469)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 12072155 - 12072330
Alignment:
Q  18 attatactatgaatttctatgagcatctcttaggacccgtctttgggg-tgagcaaacagctcaaccggttgagctaggccaccaaaggtgacgggccta 116  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12072155 attatactatgaatttctataagcatctcctaggacccgtccttgggggtgagcaaacagctcaaccggttgagctgggccaccaaaggtgacgggccta 12072254  T
Q  117 aaaacaaattaccaatacccacctccaatcaaaggag-nnnnnnnncatgttcttgtttcttatttcttccaacaa 191  Q
    ||||||||||||||||||||||| |||||||||||||         ||||||||||||||||||||||||||||||    
T  12072255 aaaacaaattaccaatacccacccccaatcaaaggagaaaaaaaaacatgttcttgtttcttatttcttccaacaa 12072330  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 12072415 - 12072473
Alignment:
Q  191 ataaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12072415 ataaccaccaccaatccaacatacatctatcctttagactgtagttctcctttttggac 12072473  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 7773491 - 7773548
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  7773491 taaccaccaccaatccaacatacatctatcctttatactctagttctcctttttggac 7773548  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 7790131 - 7790188
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||    
T  7790131 taaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggac 7790188  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 7810717 - 7810774
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||    
T  7810717 taaccaccaccaatccaacatacatctatcctttatactgtagttctcctttgtggac 7810774  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 524994 - 524938
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttgga 248  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  524994 taaccaccaccaatccaacacacatctatcctttagactctagttctcctttttgga 524938  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 15035927 - 15035870
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  15035927 taaccaccaccaatccaacattcatctatcctatagactttagttctcctttttggac 15035870  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 31234829 - 31234875
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttct 238  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||    
T  31234829 taaccaccacaaatccaacatacatttatcctttagactctagttct 31234875  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 31243966 - 31244012
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttct 238  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||    
T  31243966 taaccaccacaaatccaacatacatttatcctttagactctagttct 31244012  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 1722296 - 1722243
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctctttttt 245  Q
    ||||||| |||||||||| || ||||||||||||||||||| |||||| |||||    
T  1722296 taaccactaccaatccaatatccatctatcctttagactctggttctccttttt 1722243  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 32055979 - 32056033
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttg 246  Q
    ||||||||||| || |||||| |||||||||| || |||||||||||| ||||||    
T  32055979 taaccaccacctattcaacatccatctatcctctaaactctagttctcatttttg 32056033  T

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Target: scaffold0482 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 1782 - 1725
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||| ||| |||||    
T  1782 taaccaccaccaatccaacatacatctatcctttatattgtagttctcctttgtggac 1725  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 2445920 - 2445875
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttc 237  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  2445920 taaccaccaccaatccaacttacatctatcctctagactctagttc 2445875  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 35202864 - 35202808
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttgga 248  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||| || ||||||||    
T  35202864 taaccaccaccaatccaacattcatctatcctatagactttagttatcctttttgga 35202808  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 4207500 - 4207443
Alignment:
Q  192 taaccaccaccaatccaacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||| ||||| ||| |||| ||| ||||||||||||| |||||||||    
T  4207500 taaccaccaccaatcgaacatgcatatatcatttcgactctagttctcctttttggac 4207443  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 21660428 - 21660469
Alignment:
Q  208 aacatacatctatcctttagactctagttctcttttttggac 249  Q
    ||||||||||||||||||||||| || ||||| |||||||||    
T  21660428 aacatacatctatcctttagactatatttctcctttttggac 21660469  T

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