View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_high_34 (Length: 217)
Name: NF6327_high_34
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 21124394 - 21124246
Alignment:
| Q |
51 |
catgacacaaaatcataacaaatatatttcataagaattgaatgttattaccttgtcccaaccataatcattccacacaagagacaaatcattggcaatt |
150 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
21124394 |
catgatacaaaatcataacaaatatatttcataagaattgaatgttattaccttgtcccaaccataatcattccacacaagagacaagttattggctatt |
21124295 |
T |
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| Q |
151 |
ttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
199 |
Q |
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| T |
21124294 |
ttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
21124246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 21144484 - 21144336
Alignment:
| Q |
51 |
catgacacaaaatcataacaaatatatttcataagaattgaatgttattaccttgtcccaaccataatcattccacacaagagacaaatcattggcaatt |
150 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
21144484 |
catgatacaaaatcataacaaatatatttcataagaattgaatgttattaccttgtcccaaccataatcattccacacaagagacaagttattggctatt |
21144385 |
T |
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| Q |
151 |
ttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
199 |
Q |
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| T |
21144384 |
ttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
21144336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 21149643 - 21149541
Alignment:
| Q |
76 |
atttcataagaattgaatgttattaccttgtcccaaccataatcattccacacaagagacaaatcattggcaattttaaaaggaccattctcataaaaca |
175 |
Q |
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| T |
21149643 |
atttcgtaggaattgactgtcattaccttatcccagccatagtcattccatacaagagacaagttattggcaattttaaaaggaccgttctcataaaaca |
21149544 |
T |
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| Q |
176 |
aag |
178 |
Q |
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||| |
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| T |
21149543 |
aag |
21149541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 21114747 - 21114648
Alignment:
| Q |
100 |
accttgtcccaaccataatcattccacacaagagacaaatcattggcaattttaaaaggaccattctcataaaacaaagctagttcactactgcaacctg |
199 |
Q |
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| T |
21114747 |
accttgtcccagccatattgattccaaacaagagacaagtcatccgcaatatgaaaaggaccgttttcataaaacaaagctagttcactgccgcaacctg |
21114648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 42336264 - 42336175
Alignment:
| Q |
99 |
taccttgtcccaaccataatcattccacacaagagacaaatcattggcaattttaaaaggaccattctcataaaacaaagctagttcact |
188 |
Q |
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| T |
42336264 |
taccttgtcccaaccaaattcattccatacaagggacaaattgttagcaattttgaaagggccattttcataaaacacagccaattcact |
42336175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 19577536 - 19577626
Alignment:
| Q |
98 |
ttaccttgtcccaaccataatcattccacacaagagacaaatcattggcaattttaaaaggaccattctcataaaacaaagctagttcact |
188 |
Q |
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| T |
19577536 |
ttaccttgtcccaaccatagtggttccacgtaagagacaagtcatccttaattttgaaaggaccattttcgtaaaacaaagccaattcact |
19577626 |
T |
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