View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_high_8 (Length: 452)

Name: NF6327_high_8
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_high_8
NF6327_high_8
[»] chr2 (7 HSPs)
chr2 (5-180)||(12072506-12072681)
chr2 (377-444)||(12073041-12073108)
chr2 (5-141)||(33280202-33280338)
chr2 (1-40)||(18916075-18916114)
chr2 (218-270)||(12072723-12072772)
chr2 (1-42)||(15457504-15457545)
chr2 (1-33)||(38599406-38599438)
[»] chr3 (8 HSPs)
chr3 (1-148)||(4207268-4207414)
chr3 (3-147)||(21660500-21660644)
chr3 (1-148)||(35202631-35202778)
chr3 (1-68)||(42009251-42009322)
chr3 (1-40)||(29387775-29387814)
chr3 (1-68)||(27303191-27303262)
chr3 (1-69)||(46904746-46904818)
chr3 (1-40)||(54430556-54430595)
[»] chr6 (14 HSPs)
chr6 (1-142)||(31234915-31235056)
chr6 (1-141)||(31244052-31244191)
chr6 (1-148)||(1327597-1327744)
chr6 (2-111)||(32056065-32056173)
chr6 (35-151)||(1722125-1722242)
chr6 (1-118)||(15035725-15035840)
chr6 (1-66)||(3748559-3748628)
chr6 (82-141)||(28847698-28847757)
chr6 (1-39)||(6360764-6360802)
chr6 (61-147)||(10670053-10670138)
chr6 (74-142)||(1112424-1112493)
chr6 (74-131)||(2356637-2356693)
chr6 (1-42)||(7525185-7525226)
chr6 (4-40)||(29401147-29401183)
[»] chr1 (6 HSPs)
chr1 (1-149)||(32810262-32810411)
chr1 (1-40)||(5560487-5560526)
chr1 (1-40)||(12884158-12884197)
chr1 (74-148)||(52127551-52127625)
chr1 (87-149)||(7380298-7380360)
chr1 (74-131)||(48660258-48660314)
[»] chr8 (10 HSPs)
chr8 (9-139)||(5971679-5971808)
chr8 (1-69)||(7773606-7773674)
chr8 (1-40)||(43968091-43968130)
chr8 (1-42)||(42951788-42951829)
chr8 (76-148)||(4837109-4837180)
chr8 (76-148)||(4842554-4842625)
chr8 (1-69)||(7790246-7790314)
chr8 (1-69)||(7810832-7810900)
chr8 (74-131)||(8341173-8341229)
chr8 (1-33)||(12531563-12531595)
[»] chr7 (7 HSPs)
chr7 (1-138)||(2445699-2445836)
chr7 (74-131)||(25859186-25859242)
chr7 (1-40)||(4099972-4100011)
chr7 (1-40)||(18895418-18895457)
chr7 (5-38)||(8358317-8358350)
chr7 (1-42)||(40738010-40738051)
chr7 (1-42)||(44894048-44894089)
[»] chr4 (6 HSPs)
chr4 (16-137)||(41305719-41305838)
chr4 (1-40)||(43154809-43154848)
chr4 (1-68)||(35653969-35654040)
chr4 (2-40)||(10575544-10575582)
chr4 (3-40)||(21791568-21791605)
chr4 (74-138)||(16061386-16061450)
[»] chr5 (15 HSPs)
chr5 (5-80)||(524830-524905)
chr5 (1-67)||(37029026-37029092)
chr5 (1-40)||(7390421-7390460)
chr5 (1-40)||(29156194-29156233)
chr5 (6-69)||(16515533-16515600)
chr5 (74-148)||(35147146-35147220)
chr5 (1-40)||(13423868-13423907)
chr5 (1-40)||(13656214-13656253)
chr5 (1-40)||(17513957-17513996)
chr5 (1-40)||(19099335-19099374)
chr5 (1-40)||(33281678-33281717)
chr5 (74-148)||(11245485-11245559)
chr5 (74-115)||(7225657-7225698)
chr5 (81-149)||(17535687-17535755)
chr5 (99-147)||(22868163-22868211)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-69)||(1599-1667)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 12072506 - 12072681
Alignment:
Q  5 tataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatt 104  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12072506 tataatcacttaatcaatcaatttaaaaagttatttcaaagaatcacaacaattccttctttttcacagaattgtgtttttattttattagaggcctatt 12072605  T
Q  105 tctattatgagagtcgagccttcaattttataggaacgaccctgatatctctcatataaatactcttatgattact 180  Q
    |||||||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||| |||||    
T  12072606 tctattatgagagtcgagccttcaattttatatgaacgaccttagtatctctcatataaatactcttatgtttact 12072681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 12073041 - 12073108
Alignment:
Q  377 gtttagtcgttcatatttcacaaaatcatgtttgttccctaccatgctaacattgtgtctgatgatgt 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  12073041 gtttagtcgttcatatttcacaaaatcatgtttgttccctaccatattaacattgtgtctgatgatgt 12073108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 33280338 - 33280202
Alignment:
Q  5 tataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatt 104  Q
    |||||| |||| |||||||||||||||||  ||||||| |||||||||  ||   | | |||||  || |||| ||||||||||||||||||| | ||||    
T  33280338 tataattacttgatcaatcaatttaaaaaactattttaaagaatcacactaaaattatatttttcgcataattttgtttttattttattagagacatatt 33280239  T
Q  105 tctattatgagagtcgagccttcaattttataggaac 141  Q
    | ||||||||||| |||| ||||||||||| ||||||    
T  33280238 tttattatgagagccgagtcttcaattttacaggaac 33280202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18916114 - 18916075
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  18916114 tttgtataatcacttaatcaatcaatttgaaaagctattt 18916075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 12072723 - 12072772
Alignment:
Q  218 attctgttaagaatatatttgctataataatgttaaaaggaaactttctgttt 270  Q
    |||| ||||||||||||| ||||||||   |||||||||||||||||||||||    
T  12072723 attccgttaagaatatatatgctataa---tgttaaaaggaaactttctgttt 12072772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15457504 - 15457545
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttatttta 42  Q
    |||||||||||||||||||| ||||||| ||||| |||||||    
T  15457504 tttgtataatcacttaatcagtcaatttgaaaagctatttta 15457545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38599406 - 38599438
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaa 33  Q
    |||||||||||||||||||||||||||| ||||    
T  38599406 tttgtataatcacttaatcaatcaatttgaaaa 38599438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 4207414 - 4207268
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    |||||||||||||||||||| |||||||  |||| ||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||  || |    
T  4207414 tttgtataatcacttaatcattcaatttggaaagatatttcaaagaatcacaacaatcctttcttttttgcagaattgtgtttttattttattaagggtc 4207315  T
Q  101 tatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    ||||| ||||||||||||||||||| |||||||||||| || ||||||    
T  4207314 tattt-tattatgagagtcgagcctccaattttatagggacaaccctg 4207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 21660500 - 21660644
Alignment:
Q  3 tgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggccta 102  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||||| ||| ||||||||||  || ||||||||||||||||||||||| || ||    
T  21660500 tgtataatcacttaatcaatcaatttaaaaaattatttcaaagaatcacaataatcctttctttttcgcataattgtgtttttattttattagatgctta 21660599  T
Q  103 tttctattatgagagtcgagccttcaattttataggaacgaccct 147  Q
    ||| ||||||||||| |||| ||  ||||| |||  |||||||||    
T  21660600 tttttattatgagagccgagtctctaatttcataaaaacgaccct 21660644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 35202778 - 35202631
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    |||||||||| ||||||||| |||||||  ||||  |||| | | |||||||||||| ||||||||||| ||||| |||||||||| |||||||  ||||    
T  35202778 tttgtataattacttaatcagtcaattttgaaagcaatttcaaaaaatcacaacaatactttcttttttgcagaactgtgtttttaatttattaagggcc 35202679  T
Q  101 tatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    ||||| ||||||||||  ||| | | |||||| ||||| |||||||||    
T  35202678 tatttttattatgagaaccgaacatccaatttcatagggacgaccctg 35202631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 42009322 - 42009251
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttat----tttagagaatcacaacaattctttcttttt 68  Q
    |||||||||||||||||||| |||||||||||||||||    || | ||||||||||||||| |||||||||    
T  42009322 tttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaattatttcttttt 42009251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29387814 - 29387775
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  29387814 tttgtataatcacttaatcaatcaatttgaaaagttattt 29387775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27303191 - 27303262
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttat----tttagagaatcacaacaattctttcttttt 68  Q
    |||||||||||||||||||||||||||| ||||| |||    || | ||||||||||||||| |||||||||    
T  27303191 tttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttt 27303262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 46904746 - 46904818
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttat----tttagagaatcacaacaattctttctttttt 69  Q
    |||||||||||||||||||| ||||||||||||  |||    || | ||||||||||||||| ||||||||||    
T  46904746 tttgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttt 46904818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 54430556 - 54430595
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  54430556 tttgtataatcacttaatcagtcaatttgaaaagttattt 54430595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 31234915 - 31235056
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    |||||||||||||||||||||||||||| ||||| ||||| | |||||||||| |||  | | |||||  |||||||||||||||||||||||| | |||    
T  31234915 tttgtataatcacttaatcaatcaatttgaaaagctatttcaaagaatcacaataatgttatatttttcgcagaattgtgtttttattttattacatgcc 31235014  T
Q  101 tatttctattatgagagtcgagccttcaattttataggaacg 142  Q
    ||||| |||||| | |||||||||| |||||| |||||||||    
T  31235015 tatttttattataaaagtcgagcctacaatttcataggaacg 31235056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 31244052 - 31244191
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    ||||||||||||||||||||||||||| |||| | ||||| | |||||||||| |||  | | ||||| ||||||||||||||||||||||||| | |||    
T  31244052 tttgtataatcacttaatcaatcaattgaaaa-gctatttcaaagaatcacaataatgttatatttttcacagaattgtgtttttattttattacatgcc 31244150  T
Q  101 tatttctattatgagagtcgagccttcaattttataggaac 141  Q
    ||||| |||||||| |||||||||| |||||| ||||||||    
T  31244151 tatttttattatgaaagtcgagcctacaatttcataggaac 31244191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 1327597 - 1327744
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    ||||||||||||||||||||||||||||| |||  ||||| | | |||||||| |||  | |||||||  || |||| ||||||||||||||||| |||     
T  1327597 tttgtataatcacttaatcaatcaatttagaaaactatttcaaataatcacaataatattatctttttcgcataattttgtttttattttattaggggca 1327696  T
Q  101 tatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    ||||| ||||||||||||||||||| |||||| |||  ||||||||||    
T  1327697 tatttgtattatgagagtcgagcctccaatttcataaaaacgaccctg 1327744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 32056065 - 32056173
Alignment:
Q  2 ttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcct 101  Q
    ||||||||||||||||||| ||||||||||||| ||||| |   ||||| || ||| ||||||||||| ||||||||||||||||||||||||| | |||    
T  32056065 ttgtataatcacttaatcactcaatttaaaaagctatttaatt-aatcataataatcctttcttttttgcagaattgtgtttttattttattagggacct 32056163  T
Q  102 atttctatta 111  Q
    |||| |||||    
T  32056164 atttttatta 32056173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 1722242 - 1722125
Alignment:
Q  35 ttattttagagaatcacaacaattctttctttttta-cagaattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatttt 133  Q
    |||||| | ||||| ||||| || |||||||||||  || |||||||||||||||||||||||| ||||||| ||||||||||||| || ||  |||||     
T  1722242 ttatttcaaagaatgacaacgatcctttctttttttgcaaaattgtgtttttattttattagagacctatttttattatgagagtcaagtctctaatttc 1722143  T
Q  134 ataggaacgaccctgata 151  Q
    ||||| ||||||||||||    
T  1722142 atagggacgaccctgata 1722125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15035840 - 15035725
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    |||||||||||| |||| || ||||||| ||||| |  || | |||||||||||||||  ||||||||   | | |||||||||||||||||||| | ||    
T  15035840 tttgtataatcatttaaccagtcaatttgaaaagctgattcaaagaatcacaacaatt--ttctttttcgaatatttgtgtttttattttattagggacc 15035743  T
Q  101 tatttctattatgagagt 118  Q
    ||||| |||||| |||||    
T  15035742 tatttttattattagagt 15035725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3748628 - 3748559
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttat----tttagagaatcacaacaattctttcttt 66  Q
    |||||||||||||||||||||||||||| ||||| |||    || | ||||||||||||||| |||||||    
T  3748628 tttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttt 3748559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 28847757 - 28847698
Alignment:
Q  82 ttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaac 141  Q
    |||| |||||||||  |||||||| || |||||||||||||||||||||||  |||||||    
T  28847757 tttttttttattaggagcctatttttactatgagagtcgagccttcaatttcgtaggaac 28847698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6360764 - 6360802
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttatt 39  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  6360764 tttgtataatcacttaatcagtcaatttgaaaagttatt 6360802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 10670053 - 10670138
Alignment:
Q  61 ttcttttttacagaattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccct 147  Q
    |||||||||  | |||||||||||| ||||||||  ||||||||| || |||||||||||||||| || ||| ||||| ||| ||||    
T  10670053 ttctttttttaaaaattgtgttttt-ttttattaagggcctatttttactatgagagtcgagcctccagtttcatagggacggccct 10670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 1112493 - 1112424
Alignment:
Q  74 aattgtgt-ttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacg 142  Q
    |||||||| |||| |||||||| || ||||||| || || ||||||||||||| || |||||||||||||    
T  1112493 aattgtgtatttttttttattaaagacctatttttactacgagagtcgagcctccagttttataggaacg 1112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 2356693 - 2356637
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 131  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||    
T  2356693 aattatgtttttattttattaggggcctatttata-tatgagagccgagcctccaatt 2356637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7525226 - 7525185
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttatttta 42  Q
    |||||||||||||||||||| |||||||  ||||||||||||    
T  7525226 tttgtataatcacttaatcagtcaatttggaaagttatttta 7525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 29401147 - 29401183
Alignment:
Q  4 gtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  29401147 gtataatcacttaatcagtcaatttgaaaagttattt 29401183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 32810411 - 32810262
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttctttttt-acagaattgtgtttttattttattagaggc 99  Q
    |||| ||||||||||||||||||||||| ||||| ||||| | ||||||  || ||| |||||||||||  || ||||||||||||||||||| |  |||    
T  32810411 tttgaataatcacttaatcaatcaatttgaaaagctatttcaaagaatcctaataatcctttcttttttcgcataattgtgtttttattttataaagggc 32810312  T
Q  100 ctatttctattatgagagtcgagccttcaattttataggaacgaccctga 149  Q
     ||||| ||||||||||   |||| | |||||| |||| |||||||||||    
T  32810311 ttatttttattatgagaaatgagcttccaatttcatagaaacgaccctga 32810262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5560487 - 5560526
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5560487 tttgtataatcacttaatcagtcaatttaaaaagttattt 5560526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12884197 - 12884158
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  12884197 tttgtataatcacttaatcagtcaatttaaaaagctattt 12884158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 52127625 - 52127551
Alignment:
Q  74 aattgtgtttttatttt-attagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    |||| |||||||||||| ||||||||||||| | ||| || |||||||||||| ||| | ||||||||||||||||    
T  52127625 aattatgtttttatttttattagaggcctatctttat-attagagtcgagcctccaaatatataggaacgaccctg 52127551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 7380360 - 7380298
Alignment:
Q  87 ttttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctga 149  Q
    ||||||||| ||||||||| || || ||||| ||||||| |||||||||||| ||| ||||||    
T  7380360 ttttattaggggcctatttttactacgagagacgagcctccaattttatagggacggccctga 7380298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 48660258 - 48660314
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 131  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||    
T  48660258 aattatgtttttattttattaggggcctattttta-tatgagagccgagcctccaatt 48660314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 5971808 - 5971679
Alignment:
Q  9 atcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttcta 108  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||||||   |||| |||| || |||| |  ||||||||||||| |||  ||||| ||    
T  5971808 atcacttaatcagtcaatttaaaaagctattttaaagaatcacaacaatcagttctcttttgcataatttttattttattttatta-aggattattttta 5971710  T
Q  109 ttatgagagtcgagccttcaattttatagga 139  Q
    |||||||||||  |||| |||||| ||||||    
T  5971709 ttatgagagtcaggcctccaatttcatagga 5971679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7773606 - 7773674
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttctttttt 69  Q
    |||||||||||||||| | ||| |||||||||| |||||| | |||||||||| |||||||| ||||||    
T  7773606 tttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataattctttgtttttt 7773674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43968130 - 43968091
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43968130 tttgtataatcacttaatcaatcaatttgaaaagttattt 43968091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42951829 - 42951788
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttatttta 42  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  42951829 tttgtataatcacttaatcagtcaatttgaaaagttatttta 42951788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 4837109 - 4837180
Alignment:
Q  76 ttgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||| | ||||||||| ||||| ||| |||||    
T  4837109 ttgtgtttttattttataaggggcctattt-tattttgagagtcgggtcttcaatttgatagggacggccctg 4837180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 4842554 - 4842625
Alignment:
Q  76 ttgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||| | ||||||||| ||||| ||| |||||    
T  4842554 ttgtgtttttattttataaggggcctattt-tattttgagagtcgggtcttcaatttgatagggacggccctg 4842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7790246 - 7790314
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttctttttt 69  Q
    |||||||||||||||| | ||| |||||||||| |||||| | |||||||||| ||| |||| ||||||    
T  7790246 tttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttt 7790314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7810832 - 7810900
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttctttttt 69  Q
    |||||||||||||||| | ||| |||||||||| |||||| | |||||||||| ||| |||| ||||||    
T  7810832 tttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttt 7810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 8341229 - 8341173
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 131  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| ||||||| |||||    
T  8341229 aattatgtttttattttattaggggcctattttta-tatgagagccgagcctccaatt 8341173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12531563 - 12531595
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaa 33  Q
    |||||||||||||||||||| ||||||||||||    
T  12531563 tttgtataatcacttaatcagtcaatttaaaaa 12531595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 2445836 - 2445699
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcc 100  Q
    ||||||||||||||||||| ||||| |||||| ||||||| | ||||||||| ||||| ||| |||||   | ||||  |||||||||| ||||||  ||    
T  2445836 tttgtataatcacttaatctatcaaattaaaaggttatttcaaagaatcacaccaattatttatttttcgtataatttagtttttatttgattagaaacc 2445737  T
Q  101 tatttctattatgagagtcgagccttcaattttatagg 138  Q
    ||||| ||| ||||||||| | | | ||||||||||||    
T  2445736 tatttttataatgagagtccatcatccaattttatagg 2445699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 25859186 - 25859242
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaatt 131  Q
    |||| ||||||||||||||||| ||||||||| || |||||||||||||||| |||||    
T  25859186 aattatgtttttattttattaggggcctattttta-tatgagagtcgagcctccaatt 25859242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4099972 - 4100011
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  4099972 tttgtataatcacttaatcaatcaatttgaaaagctattt 4100011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18895457 - 18895418
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  18895457 tttgtataatcaattaatcagtcaatttaaaaagttattt 18895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 8358350 - 8358317
Alignment:
Q  5 tataatcacttaatcaatcaatttaaaaagttat 38  Q
    |||||||||||||||| |||||||||||||||||    
T  8358350 tataatcacttaatcagtcaatttaaaaagttat 8358317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40738051 - 40738010
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttatttta 42  Q
    |||||||||| ||||||||| ||||||||||||| |||||||    
T  40738051 tttgtataattacttaatcagtcaatttaaaaagctatttta 40738010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44894089 - 44894048
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttatttta 42  Q
    ||||||||||||||||||||||||||||  |||| |||||||    
T  44894089 tttgtataatcacttaatcaatcaatttggaaagctatttta 44894048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 41305719 - 41305838
Alignment:
Q  16 aatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtgtttttattttattagaggcctatttctattatgag 115  Q
    |||||||||||||| ||| |||||| | |||||||||  |||  |||||||||  || |||||| |||||||||||||| || || |||| |||||||||    
T  41305719 aatcaatcaatttagaaaattatttcaaagaatcacagtaatattttctttttcgcataattgt-tttttattttatta-agaccaatttttattatgag 41305816  T
Q  116 agtcgagccttcaattttatag 137  Q
    |||||||||| |||||||||||    
T  41305817 agtcgagcctccaattttatag 41305838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43154848 - 43154809
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  43154848 tttgtataatcacttaatcagtcaatttaaaaagttattt 43154809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35654040 - 35653969
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttat----tttagagaatcacaacaattctttcttttt 68  Q
    |||||||||||||||||||||||||||| ||||| |||    || | ||||||||||||||| |||||||||    
T  35654040 tttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttt 35653969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 10575582 - 10575544
Alignment:
Q  2 ttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  10575582 ttgtataatcacttaatcagtcaatttagaaagttattt 10575544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 21791605 - 21791568
Alignment:
Q  3 tgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  21791605 tgtataatcacttaatcagtcaatttgaaaagttattt 21791568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 16061450 - 16061386
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttatagg 138  Q
    |||||||  ||| ||||||||||||||||||| || || ||||| ||||||| || |||||||||    
T  16061450 aattgtgcgttttttttattagaggcctatttttactacgagagccgagcctccagttttatagg 16061386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 524905 - 524830
Alignment:
Q  5 tataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttcttttttacagaattgtg 80  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||  || ||||||||||  ||||||||||    
T  524905 tataatcacttaatcaatcaatttaaaaaactattttaaagaatcacaattatcctttctttttcgcagaattgtg 524830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37029092 - 37029026
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttctttt 67  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||| |||| ||| |||||||||    
T  37029092 tttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaattacaataatcctttctttt 37029026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7390460 - 7390421
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttattt 7390421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29156194 - 29156233
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  29156194 tttgtataatcacttaatcagtcaatttaaaaagttattt 29156233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 16515533 - 16515600
Alignment:
Q  6 ataatcacttaatcaatcaatttaaaaagttattttag----agaatcacaacaattctttctttttt 69  Q
    ||||||||||||||||||||||| |||| ||||||||     ||||||||||||||| ||||||||||    
T  16515533 ataatcacttaatcaatcaatttgaaaaattattttattgaaagaatcacaacaattatttctttttt 16515600  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 35147146 - 35147220
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    ||||||||||||||||||| |||||||||||| || | | ||||||||||||  |||| |||||| ||| |||||    
T  35147146 aattgtgtttttattttatgagaggcctatttttaatgttagagtcgagcctctaattctatagggacggccctg 35147220  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13423868 - 13423907
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13423868 tttgtataatcacttaatcaatcaatttagaaagctattt 13423907  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13656214 - 13656253
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  13656214 tttgtataatcacttaatcagtcaatttgaaaagttattt 13656253  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17513996 - 17513957
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  17513996 tttgtataatcacttaatcagtcaatttgaaaagttattt 17513957  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19099374 - 19099335
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  19099374 tttgtataatcacttaatcagtcaatttaaaaagctattt 19099335  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33281678 - 33281717
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattt 40  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  33281678 tttgtataatcacttaattagtcaatttaaaaagttattt 33281717  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 11245485 - 11245559
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctg 148  Q
    |||||||| ||| ||||| |||||||| |||| || ||||||||  || ||| |||||| |||||||||||||||    
T  11245485 aattgtgtgttttttttactagaggccaatttttactatgagagctgaacctccaatttcataggaacgaccctg 11245559  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 7225657 - 7225698
Alignment:
Q  74 aattgtgtttttattttattagaggcctatttctattatgag 115  Q
    |||||||||||||||||| ||| ||||||||| |||||||||    
T  7225657 aattgtgtttttattttactaggggcctatttttattatgag 7225698  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 17535755 - 17535687
Alignment:
Q  81 tttttattttattagaggcctatttctattatgagagtcgagccttcaattttataggaacgaccctga 149  Q
    ||||||||||||  | || |||||| ||||||||||||||| ||| |||| | ||||| ||||||||||    
T  17535755 tttttattttatatggggtctatttttattatgagagtcgaacctccaatctcatagggacgaccctga 17535687  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 22868163 - 22868211
Alignment:
Q  99 cctatttctattatgagagtcgagccttcaattttataggaacgaccct 147  Q
    ||||||| |||||||||||| ||||||||| ||| ||||| ||||||||    
T  22868163 cctatttttattatgagagttgagccttcagtttcatagggacgaccct 22868211  T

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Target: scaffold0482 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1667 - 1599
Alignment:
Q  1 tttgtataatcacttaatcaatcaatttaaaaagttattttagagaatcacaacaattctttctttttt 69  Q
    |||||||||||||||| | ||| |||||||||| |||||| | |||||||||| ||| |||| ||||||    
T  1667 tttgtataatcacttagtgaattaatttaaaaaattatttcaaagaatcacaataatcctttgtttttt 1599  T

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