View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_low_11 (Length: 377)

Name: NF6327_low_11
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_low_11
NF6327_low_11
[»] chr5 (30 HSPs)
chr5 (21-215)||(29870769-29870967)
chr5 (21-211)||(30434409-30434603)
chr5 (21-215)||(30481915-30482113)
chr5 (21-215)||(30748226-30748424)
chr5 (21-215)||(30243694-30243894)
chr5 (21-158)||(30339847-30339984)
chr5 (21-207)||(29851892-29852080)
chr5 (21-215)||(30058880-30059069)
chr5 (23-146)||(30398670-30398793)
chr5 (26-180)||(17419218-17419373)
chr5 (21-109)||(4380357-4380445)
chr5 (95-159)||(30678629-30678693)
chr5 (23-145)||(29710294-29710416)
chr5 (23-141)||(30205102-30205220)
chr5 (214-275)||(29851735-29851796)
chr5 (219-275)||(29870646-29870702)
chr5 (161-215)||(30340004-30340059)
chr5 (278-311)||(30714756-30714789)
chr5 (74-142)||(17981534-17981602)
chr5 (219-275)||(30058757-30058813)
chr5 (227-275)||(30481792-30481840)
chr5 (73-140)||(30202743-30202810)
chr5 (281-310)||(29870580-29870609)
chr5 (21-54)||(30678562-30678595)
chr5 (278-311)||(30678954-30678987)
chr5 (283-311)||(30244072-30244100)
chr5 (37-141)||(30246138-30246242)
chr5 (283-311)||(30434201-30434229)
chr5 (161-210)||(30678707-30678758)
chr5 (156-215)||(30714546-30714606)
[»] chr7 (1 HSPs)
chr7 (21-146)||(26705919-26706044)
[»] chr4 (5 HSPs)
chr4 (32-150)||(20298080-20298198)
chr4 (29-145)||(20303959-20304074)
chr4 (219-280)||(20298317-20298378)
chr4 (281-310)||(20298405-20298434)
chr4 (93-145)||(13615449-13615501)
[»] chr1 (1 HSPs)
chr1 (93-145)||(7098003-7098055)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 9e-55; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 29870967 - 29870769
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    |||||||||||||||||||||||||||| ||||||||||||   |||||   ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  29870967 tgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaacaggggaggattg 29870868  T
Q  121 ggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaatt 215  Q
    ||||||||||||||||||||||| || | ||||||   ||   |||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  29870867 ggacaagatagctcatattccaataatacagtttaccgaggattaagaagcagagacgtttacccttatctgccacaatcaacatcgcaaaaatcaatt 29870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 30434603 - 30434409
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    |||||||||||||||||||||||||||||||||||||||||  |||   | |||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  30434603 tgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattg 30434504  T
Q  121 ggacaagatagctcatattccaaaaagagagt---ttaagttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatc 211  Q
    ||||||||||||||||||||||| || |||||   || |  | |||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  30434503 ggacaagatagctcatattccaagaatagagttgattgatgtttaagaagcagagacgtttacccttatctgcctcaatcaccatcgcaaaaatc 30434409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 30482113 - 30481915
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    ||||||||||||||||||||||||||||||||||| |||||   |||    | |||||||||||||||||| ||||||||||||||||| | ||||||||    
T  30482113 tgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaacatgggaggattg 30482014  T
Q  121 ggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaatt 215  Q
    |||||||||||||||||||||||||| | ||||||   ||   |||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  30482013 ggacaagatagctcatattccaaaaatacagtttaccgaggattaagaagcagagacgtttacccttatctgccacaatcaacatcgcaaaaatcaatt 30481915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 30748424 - 30748226
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    ||||||||||||||||||||||||||||||||||||||||   |||   | |||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  30748424 tgccggagggtattcgacacctcacttctcttgagcttcttgatatcattgattgcccaacattagaggaacgatgcaaagagggaacatgggaggattg 30748325  T
Q  121 ggacaagatagctcatattccaaaaagagagttta---agttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaatt 215  Q
    |||||||||||||||||||||||||| |  |||||   ||   |||||| ||||||||||||||| |||||||| ||||||| ||||||||| ||||||    
T  30748324 ggacaagatagctcatattccaaaaatactgtttacagaggattaagaagcagagacgtttacccttatctgcctcaatcacaatcgcaaaattcaatt 30748226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 30243694 - 30243894
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    ||||||||||||||||||||||||||||||||||| || ||  |||| || | || ||||||||||||||| ||||||||||||||||||| ||||||||    
T  30243694 tgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaacaggggaggattg 30243793  T
Q  121 ggacaagatagctcatattccaaaaagagag---tttaagttataagaa--acagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaat 214  Q
    ||||||||||||||||||||||||||||| |   ||| ||    |||||   ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  30243794 ggacaagatagctcatattccaaaaagagtgattttttagaatgaagaagggcagagacgtttacccttatctgcctcaatcaccatcgcaaaaatcaat 30243893  T
Q  215 t 215  Q
    |    
T  30243894 t 30243894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 30339847 - 30339984
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    |||||||||||||||||||||||||||||||||||||||||  |||   | |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  30339847 tgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaacaggggaggattg 30339946  T
Q  121 ggacaagatagctcatattccaaaaagagagtttaagt 158  Q
    |||||||||||||||||||||||| | | |||||||||    
T  30339947 ggacaagatagctcatattccaaatatacagtttaagt 30339984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 29852080 - 29851892
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    |||||||||||||| ||||||||||||||||||||||||||   ||| |  |||||||||||||||||||| ||||||||| ||||||| | ||||||||    
T  29852080 tgccggagggtattggacacctcacttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaaagtgggaacatgtgaggattg 29851981  T
Q  121 ggacaagatagctcatattccaaaaagagagtttaagttataagaaacagagacgtttaccc-tatct-gccacaatcaccatcgcaaa 207  Q
    |||||||||| ||||||||||||| | | ||||||| |  |||||| ||||||| ||||||| ||||| ||| ||||||||||||||||    
T  29851980 ggacaagatatctcatattccaaatatacagtttaactattaagaagcagagacatttacccttatctggcctcaatcaccatcgcaaa 29851892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 30059069 - 30058880
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    |||||||||||||||||||||||||||||||||||||||||  |||   |  ||||| ||||||| ||||| |||||||  || ||||||| ||||||||    
T  30059069 tgccggagggtattcgacacctcacttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaagaagcgaacaggggaggattg 30058970  T
Q  121 ggacaagatagctcatattccaaaaagagagtttaagttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaatt 215  Q
    |||||||||| ||||||||||||||| | |||||      |||||| ||||||||||||||| |||||||| || | |||||||||||||||||||    
T  30058969 ggacaagatatctcatattccaaaaatacagttt------taagaagcagagacgtttacccttatctgcctcattaaccatcgcaaaaatcaatt 30058880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 30398793 - 30398670
Alignment:
Q  23 ccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattggg 122  Q
    |||||||||||| |||||||||||||||||||| |||||   ||  || |||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  30398793 ccggagggtattagacacctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattggg 30398694  T
Q  123 acaagatagctcatattccaaaaa 146  Q
    ||||||||||||||||||||||||    
T  30398693 acaagatagctcatattccaaaaa 30398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 17419218 - 17419373
Alignment:
Q  26 gagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattgggaca 125  Q
    |||||||||||||||||||||||||  ||| |||||   ||| || | | |||||||||||||||| ||||||| |||||||| || |||||||||||||    
T  17419218 gagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgcaaggagggaaccggggaggattgggaca 17419317  T
Q  126 agatagctcatattccaaaaagagagtttaagttataagaaac-agagacgtttac 180  Q
    ||||||||||||||||||||| | |||| ||||  |||||| | ||||||||||||    
T  17419318 agatagctcatattccaaaaataaagttaaagtattaagaagcaagagacgtttac 17419373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 4380445 - 4380357
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaaca 109  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||   |  ||||||||||||||||||| |||||||||||||||||    
T  4380445 tgccggagggtattcgacacctcacttctcttgaggttctgagaatcattggttgcccaacattagaggaacgatgcaaagagggaaca 4380357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 30678629 - 30678693
Alignment:
Q  95 tgcaaagagggaacaggagaggattgggacaagatagctcatattccaaaaagagagtttaagtt 159  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||||| | ||||||||||    
T  30678629 tgcaaagagggaatgggggaggattgggacaagatagctcatattccaaaaatacagtttaagtt 30678693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 29710294 - 29710416
Alignment:
Q  23 ccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattggg 122  Q
    ||||||||||||   | |||||||||||||||| |||||  | || || ||| | |||||||||||||| ||||||| |||||| || | ||||||| ||    
T  29710294 ccggagggtattgctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagggagcaagggaggattagg 29710393  T
Q  123 acaagatagctcatattccaaaa 145  Q
    |||||||||| ||| ||||||||    
T  29710394 acaagatagcgcatgttccaaaa 29710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 30205220 - 30205102
Alignment:
Q  23 ccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattggg 122  Q
    ||||| ||||||||||| ||||||||||| |||||||||   |||  |  ||| |||||| |||| ||  ||||||| ||||||||||||||||| |||     
T  30205220 ccggaaggtattcgacatctcacttctctggagcttctgacaattcgtggttgtccaacactagaagagcgatgcaaggagggaacaggagaggactggt 30205121  T
Q  123 acaagatagctcatattcc 141  Q
    |||||||| | ||||||||    
T  30205120 acaagatatcgcatattcc 30205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 29851796 - 29851735
Alignment:
Q  214 ttatatattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 275  Q
    ||||||||| |||||||||||||||||| ||||||||||  || ||||||||||| ||||||    
T  29851796 ttatatattctcattgttgacttctttgtaacccattccgtaggaagagatccagggtacat 29851735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 29870702 - 29870646
Alignment:
Q  219 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 275  Q
    |||| ||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||    
T  29870702 tattctcattgtcgacatctttggaacccattccgcaggaagagatccagagtacat 29870646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 30340004 - 30340059
Alignment:
Q  161 taagaaacagagacgtttaccct-atctgccacaatcaccatcgcaaaaatcaatt 215  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  30340004 taagaagcagagacgtttacccttatctgcctcaatcaccatcgcaaaattcaatt 30340059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 30714756 - 30714789
Alignment:
Q  278 aattgttctaattcaggtaattttcttcatcata 311  Q
    ||||||||||||||||||||||||||||||||||    
T  30714756 aattgttctaattcaggtaattttcttcatcata 30714789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 17981602 - 17981534
Alignment:
Q  74 tgcccaacattagaggaaagatgcaaagagggaacaggagaggattgggacaagatagctcatattcca 142  Q
    ||||||||||| ||| |  ||||||| |||||||| ||||| || |||||||||||||| |||||||||    
T  17981602 tgcccaacattggagaagcgatgcaatgagggaaccggagaagactgggacaagatagcccatattcca 17981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 30058813 - 30058757
Alignment:
Q  219 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacat 275  Q
    |||| ||||||| ||| ||||||||||||||||  ||| ||||||||||||||||||    
T  30058813 tattctcattgtcgacatctttggaacccattctgcaggaagagatccagagtacat 30058757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 30481840 - 30481792
Alignment:
Q  227 ttgttgacttctttggaacccattcctcagaaagagatccagagtacat 275  Q
    |||||||||| ||||||||||||||| ||| |||||||||||| |||||    
T  30481840 ttgttgacttatttggaacccattccgcaggaagagatccagactacat 30481792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 30202810 - 30202743
Alignment:
Q  73 ttgcccaacattagaggaaagatgcaaagagggaacaggagaggattgggacaagatagctcatattc 140  Q
    |||||||| |||  ||||| ||||||| ||||||||||| ||| | |||||||||||||| |||||||    
T  30202810 ttgcccaatattgaaggaacgatgcaaggagggaacaggggagaactgggacaagatagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Complemental strand, 29870609 - 29870580
Alignment:
Q  281 tgttctaattcaggtaattttcttcatcat 310  Q
    ||||||||||||||||||||||||||||||    
T  29870609 tgttctaattcaggtaattttcttcatcat 29870580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 30678562 - 30678595
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttga 54  Q
    ||||||||||||||||||||||||| ||||||||    
T  30678562 tgccggagggtattcgacacctcacatctcttga 30678595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 30678954 - 30678987
Alignment:
Q  278 aattgttctaattcaggtaattttcttcatcata 311  Q
    |||||||||||||| |||||||||||||||||||    
T  30678954 aattgttctaattctggtaattttcttcatcata 30678987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 30244072 - 30244100
Alignment:
Q  283 ttctaattcaggtaattttcttcatcata 311  Q
    |||||||||||||||||||||||||||||    
T  30244072 ttctaattcaggtaattttcttcatcata 30244100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 30246138 - 30246242
Alignment:
Q  37 acacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattgggacaagatagctcat 136  Q
    ||||||||||||||| ||| |||||  |||| || |||  ||||||||| ||||  |||||||  |||  ||| | |||||| ||||||||||| |||||    
T  30246138 acacctcacttctctcgaggttctgaatattcatcattctccaacattaaaggagcgatgcaagaaggagacatgggaggatcgggacaagatatctcat 30246237  T
Q  137 attcc 141  Q
    |||||    
T  30246238 attcc 30246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 30434229 - 30434201
Alignment:
Q  283 ttctaattcaggtaattttcttcatcata 311  Q
    |||||||||||||||||||||||||||||    
T  30434229 ttctaattcaggtaattttcttcatcata 30434201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 30678707 - 30678758
Alignment:
Q  161 taagaaacagagacgtttaccct--atctgccacaatcaccatcgcaaaaat 210  Q
    |||||| ||||||||||||||||  |||||||  ||||||||||||||||||    
T  30678707 taagaagcagagacgtttaccctttatctgccttaatcaccatcgcaaaaat 30678758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 30714546 - 30714606
Alignment:
Q  156 agttataagaaacagagacgtttaccc-tatctgccacaatcaccatcgcaaaaatcaatt 215  Q
    ||||||||||| ||||||||||||||| |||||||| || |  ||||| ||||||||||||    
T  30714546 agttataagaagcagagacgtttacccttatctgcctcattagccatcacaaaaatcaatt 30714606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 26706044 - 26705919
Alignment:
Q  21 tgccggagggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattg 120  Q
    |||| |||||||||||||||||||||||||||||| ||||| | |||     ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  26706044 tgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggattg 26705945  T
Q  121 ggacaagatagctcatattccaaaaa 146  Q
    ||||||||||||||||||||||||||    
T  26705944 ggacaagatagctcatattccaaaaa 26705919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 20298080 - 20298198
Alignment:
Q  32 attcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattgggacaagatag 131  Q
    |||| |||||||||||||||||||||||||  ||| | ||||||||| |||||| ||  | ||||||||||||||||||| |||||||||||||||||||    
T  20298080 attcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacaggggaggattgggacaagatag 20298179  T
Q  132 ctcatattccaaaaagaga 150  Q
    |||||||||||||||||||    
T  20298180 ctcatattccaaaaagaga 20298198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 20303959 - 20304074
Alignment:
Q  29 ggtattcgacacctcacttctcttgagcttctgcgtattgattattgcccaacattagaggaaagatgcaaagagggaacaggagaggattgggacaaga 128  Q
    |||||||||  ||||||||| |||||| || || ||||| || | |||||||||||| ||||| | |||||   ||||||||| ||||||| ||||||||    
T  20303959 ggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaacaggcgaggatt-ggacaaga 20304057  T
Q  129 tagctcatattccaaaa 145  Q
    |||| ||||||||||||    
T  20304058 tagcgcatattccaaaa 20304074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 20298317 - 20298378
Alignment:
Q  219 tattgtcattgttgacttctttggaacccattcctcagaaagagatccagagtacataaaat 280  Q
    |||| ||| |||||||||||||||||||| |||   ||||||||||||||||||||| ||||    
T  20298317 tattctcaatgttgacttctttggaacccgttctgtagaaagagatccagagtacatgaaat 20298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 20298405 - 20298434
Alignment:
Q  281 tgttctaattcaggtaattttcttcatcat 310  Q
    ||||||||||||||||||||||||||||||    
T  20298405 tgttctaattcaggtaattttcttcatcat 20298434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 13615501 - 13615449
Alignment:
Q  93 gatgcaaagagggaacaggagaggattgggacaagatagctcatattccaaaa 145  Q
    ||||||| ||||||||| | || || |||||||||||||| ||||||||||||    
T  13615501 gatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaa 13615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 7098055 - 7098003
Alignment:
Q  93 gatgcaaagagggaacaggagaggattgggacaagatagctcatattccaaaa 145  Q
    ||||||| ||||||||||| || || |||||||||||||| ||||||||||||    
T  7098055 gatgcaaggagggaacaggggaagactgggacaagatagcccatattccaaaa 7098003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University