View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6327_low_12 (Length: 363)
Name: NF6327_low_12
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_12 |
 | |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 36364579 - 36364922
Alignment:
| Q |
18 |
gtgacgacttcaaaggtcctaatccggatgagattaattttgcattcttaagataattttggaaagacaataaagaagattttttgaagttcttttccga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36364579 |
gtgacgacttcaaaggtcctaatccggatgagattaattttgcattcttaagataattttggaaagacaataaaga---ttttttgaagttcttttccga |
36364675 |
T |
|
| Q |
118 |
ttttcataactatggacaattggtctatgtcttgaataatacttttactgctctaatttctaagaagacaaactctccacattttttctgcctctc-tga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
36364676 |
ttttcataactatggacaattggtctatgtcttgaataatacttttactgctctaatttctaagaagacaaactctccacattttttctgactctcttga |
36364775 |
T |
|
| Q |
217 |
atatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaagatgttgatgttggcga |
316 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| |||| |
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|
| T |
36364776 |
atatggtaggtattggcatatgcatccatgatgatcagggtgagtttttcatggctaagacagactgtttctctcctctttgtgttgttgaagttagcga |
36364875 |
T |
|
| Q |
317 |
ggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|| |||||||||||||| | |||| |||| | ||||| ||||||||| |
|
|
| T |
36364876 |
ggctgttggacttcacatgacactacaatgggtggctgatcttcatt |
36364922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 24542933 - 24543095
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||||||||| | | ||||||||||||| | |
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|
| T |
24542933 |
ttttctgactctctgaatatggtaggtattggcatatgcatccgtgatgatcagggtgattttgtcatggctaagacagattctttctctcctctttgtg |
24543032 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
24543033 |
atgttgatgtcggcgaggttgttggacttcacacgacactacaatggatggctgatcttcatt |
24543095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 29894625 - 29894550
Alignment:
| Q |
288 |
tctcctctttaagatgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
29894625 |
tctcctctttgtgatgttgatgttggcgaggctgttggacttcacacgacactacaatggatggctgatcttcatt |
29894550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 18480953 - 18481115
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||||||||| | || ||||||||||||| | |
|
|
| T |
18480953 |
ttttctgactctctgaatatggtaggtattggcatatgcatccgtgatgatcagggtgattttgtcatggctaagacagattgtttctctcctctttgtg |
18481052 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
18481053 |
atgttgatgttggcgaggctgttggacttcacacgacactacaatgggtggctgatcttcatt |
18481115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 51976480 - 51976642
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||||||||| | || || |||||||||| | |
|
|
| T |
51976480 |
ttttctgactctctgaatatgataggtattggcatatgcatccgtgatgatcagggtgattttgtcatggctaagacagattgtttttctcctctttgtg |
51976579 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
51976580 |
atgttgatgttggcgaggctgttggacttcacacgacactacaatgggtggctgatcttcatt |
51976642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 36684625 - 36684787
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| | |||||||||||| || | ||||||||||||||| | ||||||| ||||| ||| |||||||||||||| | || ||||||||||||| | |
|
|
| T |
36684625 |
ttttctgaccctctgaatatggtagatattggcatatgcatccgtgatgatcagggtgattttgtcatggctaagacagattgtttctctcctctttgtg |
36684724 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |||| | || || ||||||||| |
|
|
| T |
36684725 |
atgttgatgttggcgaggctgttggacttcacacggcactacaatgggtgactgatcttcatt |
36684787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 361
Target Start/End: Original strand, 8705431 - 8705592
Alignment:
| Q |
200 |
tttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaa |
299 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||| ||| | ||||||| ||| ||||| ||||| ||||| |||| ||||||||||||| |
|
|
| T |
8705431 |
tttttctgactctctgaatatggtaggtattggcatatgtatctgtgatgatcagggtaagtttgatatggcaaagacggactgtttctctcctctttgt |
8705530 |
T |
|
| Q |
300 |
gatgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttca |
361 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||| | || |||| | ||||| ||||||| |
|
|
| T |
8705531 |
gatgttgatgtcggcgaggctgttggactccacacggcgctacaatgggtggctgatcttca |
8705592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 361
Target Start/End: Original strand, 9057318 - 9057479
Alignment:
| Q |
200 |
tttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaa |
299 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||| ||| | ||||||| ||| ||||| ||||| ||||| |||| ||||||||||||| |
|
|
| T |
9057318 |
tttttctgactctctgaatatggtaggtattggcatatgtatctgtgatgatcagggtaagtttgatatggcaaagacggactgtttctctcctctttgt |
9057417 |
T |
|
| Q |
300 |
gatgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttca |
361 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||| | || |||| | ||||| ||||||| |
|
|
| T |
9057418 |
gatgttgatgtcggcgaggctgttggactccacacggcgctacaatgggtggctgatcttca |
9057479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 4978744 - 4978676
Alignment:
| Q |
259 |
agtttttcatggctaagacaaactggttctctcctctttaagatgttgatgttggcgaggttgttggacttca |
331 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4978744 |
agtttgtcatggctaagacggactgtttctctcctctt----atgttgatgttggcgaggttgttagacttca |
4978676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 11351988 - 11351826
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||||||||| | || || |||||||||| | |
|
|
| T |
11351988 |
ttttctgactctctgaatatggtaggtattggcatatgcatccgtaatgatcagggtgattttgtcatggctaagacatattgtttttctcctctttgtg |
11351889 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
11351888 |
atgttaatgttggcgaggctgttggacttcacacggcactacaatggatggctgatcttcatt |
11351826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 20639310 - 20639472
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||||||| | ||||||| |||||||||||||||||||||||| |||| | ||| ||||||| | |
|
|
| T |
20639310 |
ttttctgactctctgaatatggtaggtattggcatatgcatctgtgatgatcaaggtgagtttttcatggctaagacagactgttcctcacctctttgtg |
20639409 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | |||| |||| | ||||| ||||||||| |
|
|
| T |
20639410 |
atgttgatgttggcgaggcagttggacttcacatggcactacaatgggtggctgatcttcatt |
20639472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 6783998 - 6784142
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||| | | ||||||| | ||| ||| |||||||||||||||| || ||||||||||||| | |
|
|
| T |
6783998 |
ttttctgtctctctgaatatggtaggtattggcatatgcattcgtgatgatcaggatgattttgtcatggctaagacaaattgtttctctcctctttgtg |
6784097 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaat |
345 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
6784098 |
atgttgatgttggcgaggctgttggacttcacacggcactacaat |
6784142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 201 - 334
Target Start/End: Complemental strand, 32989279 - 32989146
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| ||||||||||| | ||||||| ||||||||| ||||||||||||| |||| ||||||||||||| | |
|
|
| T |
32989279 |
ttttctgactctctgaatatggtaggtattgacatatgcatccgtgatgatcagggtgagtttgtcatggctaagactgactgtttctctcctctttgtg |
32989180 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacac |
334 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| |
|
|
| T |
32989179 |
atgttgatgttggtgaggctgttggacttcacac |
32989146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 43989648 - 43989486
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||||||||||| | ||||||| ||||| ||| |||||||||||||| | || |||||||||| || | |
|
|
| T |
43989648 |
ttttctgactctctgaatatggtaggtattggcatatgcatccgtgatgatcagggtgattttgtcatggctaagacagattgtttctctcctcattgtg |
43989549 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
43989548 |
atgtcgatgttggcgaggctgctggacttcacacgacactacaatgggtggctgatcttcatt |
43989486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 942413 - 942575
Alignment:
| Q |
201 |
ttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaag |
300 |
Q |
| |
|
||||||| |||||||||||||| |||| | | ||||||||||| | ||||| | ||||||||| |||||||||||||| | || |||| |||||||| |
|
|
| T |
942413 |
ttttctgactctctgaatatggtaggtatcgccatatgcatccgtgatgataagggtgagtttgtcatggctaagacatattgtttctatcctctttgtc |
942512 |
T |
|
| Q |
301 |
atgttgatgttggcgaggttgttggacttcacacgtcactgcaattgctggcttatcttcatt |
363 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||| |||| |||| | ||||| ||||||||| |
|
|
| T |
942513 |
atattgatgttggcgaggcagttggacttcacacggcactacaatgggtggctgatcttcatt |
942575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 209 - 333
Target Start/End: Original strand, 23820251 - 23820375
Alignment:
| Q |
209 |
ctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctctttaagatgttgat |
308 |
Q |
| |
|
|||||| ||||||| |||| |||||||||| || | ||| ||||||||||||| |||||||||||| | |||| ||||||||||||| ||||||||| |
|
|
| T |
23820251 |
ctctctaaatatggtaggtattggcatatgtatttgtgatgttcatggtgagtttgtcatggctaagatagactgtttctctcctctttgtgatgttgat |
23820350 |
T |
|
| Q |
309 |
gttggcgaggttgttggacttcaca |
333 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
23820351 |
gtcggcgaggttgttggacttcaca |
23820375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 335
Target Start/End: Complemental strand, 36779793 - 36779657
Alignment:
| Q |
199 |
ttttttctgcctctctgaatatggcaggtgttggcatatgcatccattatgatcatggtgagtttttcatggctaagacaaactggttctctcctcttta |
298 |
Q |
| |
|
|||||| || |||||||||||||| |||| ||| |||||| |||| ||||||||| ||||||||| ||||||||||| | ||||| ||||||||||||| |
|
|
| T |
36779793 |
ttttttatgactctctgaatatggtaggtattgacatatgtatccgttatgatcagggtgagtttgtcatggctaaggcgaactgtttctctcctctttg |
36779694 |
T |
|
| Q |
299 |
agatgttgatgttggcgaggttgttggacttcacacg |
335 |
Q |
| |
|
|||| ||||||||| ||| || ||||||||||||| |
|
|
| T |
36779693 |
tgatgatgatgttggtgagactgatggacttcacacg |
36779657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 34905376 - 34905432
Alignment:
| Q |
285 |
ttctctcctctttaagatgttgatgttggcgaggttgttggacttcacacgtcactg |
341 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
34905376 |
ttctctcctctttgtgatgttgatgttggagaggttgttggtcttcatacgacactg |
34905432 |
T |
|
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