View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_low_13 (Length: 348)

Name: NF6327_low_13
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_low_13
NF6327_low_13
[»] chr5 (19 HSPs)
chr5 (1-348)||(37232795-37233142)
chr5 (267-337)||(9333562-9333632)
chr5 (267-340)||(17037572-17037645)
chr5 (267-337)||(9354390-9354460)
chr5 (265-348)||(40401999-40402082)
chr5 (276-343)||(42076085-42076152)
chr5 (267-334)||(5079068-5079135)
chr5 (270-334)||(7410856-7410920)
chr5 (276-348)||(10869475-10869546)
chr5 (4-64)||(37223843-37223903)
chr5 (267-330)||(31068971-31069033)
chr5 (1-68)||(37385086-37385153)
chr5 (271-340)||(19985028-19985097)
chr5 (4-64)||(37218129-37218189)
chr5 (267-317)||(12042198-12042248)
chr5 (267-337)||(30786296-30786366)
chr5 (267-301)||(18191886-18191920)
chr5 (267-340)||(23679470-23679543)
chr5 (267-340)||(23855268-23855341)
[»] chr2 (12 HSPs)
chr2 (265-348)||(11017484-11017567)
chr2 (267-340)||(7718214-7718287)
chr2 (267-334)||(31342720-31342787)
chr2 (267-334)||(41573422-41573489)
chr2 (267-337)||(15513696-15513766)
chr2 (276-334)||(24479190-24479248)
chr2 (267-340)||(30267032-30267105)
chr2 (270-340)||(44920989-44921059)
chr2 (271-334)||(40016624-40016687)
chr2 (277-334)||(22966564-22966621)
chr2 (270-334)||(7702461-7702525)
chr2 (267-323)||(26734777-26734833)
[»] chr8 (17 HSPs)
chr8 (267-348)||(6403622-6403703)
chr8 (267-337)||(29553658-29553728)
chr8 (267-334)||(28249079-28249146)
chr8 (267-334)||(45356116-45356183)
chr8 (270-340)||(6801828-6801898)
chr8 (267-334)||(17634475-17634542)
chr8 (267-340)||(19369908-19369981)
chr8 (267-340)||(19448477-19448550)
chr8 (267-340)||(19532526-19532599)
chr8 (276-316)||(5000717-5000757)
chr8 (267-334)||(25637673-25637740)
chr8 (267-334)||(25638836-25638903)
chr8 (267-334)||(29345460-29345527)
chr8 (267-314)||(31347378-31347425)
chr8 (267-317)||(5650966-5651016)
chr8 (267-340)||(5528772-5528845)
chr8 (271-340)||(6223434-6223503)
[»] chr3 (15 HSPs)
chr3 (267-348)||(16457321-16457402)
chr3 (267-348)||(26707888-26707969)
chr3 (267-334)||(2943218-2943285)
chr3 (267-334)||(13846021-13846088)
chr3 (267-340)||(1627945-1628018)
chr3 (267-334)||(2550195-2550262)
chr3 (267-334)||(7407758-7407825)
chr3 (270-340)||(9633440-9633510)
chr3 (267-343)||(1613208-1613284)
chr3 (285-348)||(26735681-26735744)
chr3 (267-317)||(5498507-5498557)
chr3 (270-315)||(27713462-27713507)
chr3 (278-334)||(36035329-36035385)
chr3 (267-334)||(1654605-1654672)
chr3 (271-309)||(27259474-27259512)
[»] chr1 (10 HSPs)
chr1 (267-346)||(12189981-12190060)
chr1 (269-348)||(3399653-3399732)
chr1 (267-340)||(16222807-16222880)
chr1 (267-334)||(897484-897550)
chr1 (267-334)||(13208641-13208708)
chr1 (267-322)||(28636932-28636987)
chr1 (267-317)||(1843981-1844031)
chr1 (267-317)||(5911685-5911735)
chr1 (267-326)||(15214356-15214415)
chr1 (267-317)||(15204623-15204673)
[»] chr6 (17 HSPs)
chr6 (267-334)||(16734834-16734901)
chr6 (267-343)||(23264491-23264567)
chr6 (266-317)||(29667936-29667987)
chr6 (278-348)||(4485555-4485625)
chr6 (267-340)||(15361744-15361817)
chr6 (267-334)||(11936771-11936838)
chr6 (267-334)||(11948751-11948818)
chr6 (267-317)||(23904373-23904423)
chr6 (267-340)||(6684123-6684195)
chr6 (267-332)||(9631161-9631226)
chr6 (267-340)||(12591862-12591935)
chr6 (267-340)||(14669344-14669417)
chr6 (276-340)||(2941044-2941108)
chr6 (267-340)||(17719721-17719794)
chr6 (267-346)||(34374854-34374935)
chr6 (276-348)||(7601324-7601395)
chr6 (269-317)||(10935802-10935850)
[»] scaffold0576 (1 HSPs)
scaffold0576 (267-340)||(6728-6801)
[»] chr7 (12 HSPs)
chr7 (267-334)||(26608543-26608610)
chr7 (267-340)||(9242482-9242555)
chr7 (267-340)||(26224976-26225049)
chr7 (265-348)||(3234354-3234438)
chr7 (267-334)||(4685407-4685474)
chr7 (267-334)||(30089764-30089831)
chr7 (267-340)||(26205413-26205486)
chr7 (270-334)||(10022156-10022220)
chr7 (276-348)||(16086525-16086597)
chr7 (266-348)||(27135957-27136039)
chr7 (276-317)||(16170309-16170350)
chr7 (281-334)||(20277364-20277417)
[»] chr4 (12 HSPs)
chr4 (267-334)||(4881073-4881140)
chr4 (267-334)||(24558999-24559066)
chr4 (267-334)||(43600296-43600363)
chr4 (265-316)||(48464067-48464118)
chr4 (267-340)||(1684950-1685023)
chr4 (267-340)||(47066032-47066105)
chr4 (267-340)||(1152073-1152146)
chr4 (269-334)||(4904144-4904209)
chr4 (267-340)||(53300380-53300453)
chr4 (285-348)||(21317485-21317548)
chr4 (271-334)||(21539276-21539338)
chr4 (270-314)||(37751014-37751058)
[»] scaffold0002 (1 HSPs)
scaffold0002 (276-348)||(446273-446345)
[»] scaffold0684 (1 HSPs)
scaffold0684 (267-340)||(745-818)
[»] scaffold0069 (1 HSPs)
scaffold0069 (267-340)||(40696-40769)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 37232795 - 37233142
Alignment:
Q  1 caacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaattctgccctttctttttatgtggttgattgctatcatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37232795 caacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaattctgccctttctttttatgtggttgattgctatcata 37232894  T
Q  101 tctaatttgcagttttgaaatcaaagatccgttccttagtttctttcgaaggatatagcatctttccccgtttgcgtttaaagaatattaccatgataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232895 tctaatttgcagttttgaaatcaaagatccgttccttagtttctttcgaaggatatagcatctttccccgtttgcgtttaaagaatattaccatgataaa 37232994  T
Q  201 tccaccttattcttactactaatcaattattcgtatctaacgacactacaacataatttagatctaaagaaaaaagttactaattaaatttagtaacatt 300  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37232995 tccaccttattcttactactaatcaattatttgtaactaacgacactacaagataattgagatctaaagaaaaaagttactaattaaatttagtaacatt 37233094  T
Q  301 tgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37233095 tgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 37233142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 9333632 - 9333562
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaag 337  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  9333632 aagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagtcgatgttactaaaaag 9333562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 17037572 - 17037645
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||    
T  17037572 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagagttt 17037645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 337
Target Start/End: Complemental strand, 9354460 - 9354390
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaag 337  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||| || || |||||||||||||    
T  9354460 aagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaagcccatgttactaaaaag 9354390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 40402082 - 40401999
Alignment:
Q  265 taaagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||||||| ||||||||||||||||||| || ||||| ||||||||||||| |||| ||||| |||||||| ||||| ||||    
T  40402082 taaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtgttgctaaaaagcttcagcaaca 40401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 42076085 - 42076152
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcag 343  Q
    |||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||| |||||    
T  42076085 gttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaaaagcttcag 42076152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 5079135 - 5079068
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||    
T  5079135 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 5079068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 7410856 - 7410920
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||| |||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||    
T  7410856 aaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 7410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 10869475 - 10869546
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||| |||| | ||||||    
T  10869475 gttactaattaaatttagtaacatttgaacaattgttaggtata-tccctcttactaaagagttacggtaaca 10869546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 37223843 - 37223903
Alignment:
Q  4 cagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaatt 64  Q
    ||||||||||| ||||  ||||||||||||||||||||||||| || ||||||||||||||    
T  37223843 cagataacactgatcatgtggcaggcacatttggttacatgccacctgagtatgatgaatt 37223903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 31069033 - 31068971
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttac 330  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||||||| || |||||||||    
T  31069033 aagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37385153 - 37385086
Alignment:
Q  1 caacagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaattctgc 68  Q
    ||||||||||||||  |||  |||| |||||||||||||||||||| || ||||||||||||||||||    
T  37385153 caacagataacactcttcatgtggctggcacatttggttacatgccacctgagtatgatgaattctgc 37385086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 19985028 - 19985097
Alignment:
Q  271 aaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||| ||||||||||| ||||||||||||||||  |||||||||||| |||||  ||||||||| |||||    
T  19985028 aaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagagttt 19985097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 37218129 - 37218189
Alignment:
Q  4 cagataacactaatcacatggcaggcacatttggttacatgccgcccgagtatgatgaatt 64  Q
    |||||||||||  |||  ||||||||||||||||||||||||| || ||||||||||||||    
T  37218129 cagataacactgttcatgtggcaggcacatttggttacatgccacctgagtatgatgaatt 37218189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 12042248 - 12042198
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  12042248 aagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggta 12042198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 30786296 - 30786366
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaag 337  Q
    |||||||| |||||| ||| |||||||||||||||||  |||||||||||| |  || |||||||||||||    
T  30786296 aagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaag 30786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 18191920 - 18191886
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacattt 301  Q
    |||||||| ||||||||||||||||||||||||||    
T  18191920 aagaaaaatgttactaattaaatttagtaacattt 18191886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 23679470 - 23679543
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||| ||||||||||| | |||||| || ||||| |||| || ||| |||||||||||| |||||    
T  23679470 aagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttt 23679543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 23855341 - 23855268
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||| ||||||||||| | |||||| || ||||| |||| || ||| |||||||||||| |||||    
T  23855341 aagaaaaatgttattaattaaattttgcaacattcgaacaattattagataaagttcgtgttactaaagagttt 23855268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 11017484 - 11017567
Alignment:
Q  265 taaagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  11017484 taaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaaaagcttcagtaaca 11017567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 7718214 - 7718287
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    ||||||||  ||||||||||||||||||||||  ||| |||||||||| || |||||||||||||||| |||||    
T  7718214 aagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagagttt 7718287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 31342787 - 31342720
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| |||||||||| || || |||||||||||||    
T  31342787 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 31342720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 41573422 - 41573489
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| ||||||||||||||||||||||| || | ||||||||||||| |  |||||||||||||    
T  41573422 aagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaaccccgtgttactaaa 41573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 15513696 - 15513766
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaag 337  Q
    |||||||| ||||||| |||||||| |||||| |||| ||||||||||||| ||  |||||||||||||||    
T  15513696 aagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaag 15513766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 24479190 - 24479248
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||  ||||||||||||    
T  24479190 gttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaa 24479248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 30267032 - 30267105
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||| ||||||||||||||||||  ||| ||||||||||||| || ||||||||| ||| |||||    
T  30267032 aagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttt 30267105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 44920989 - 44921059
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    ||||| |||||||||||||||||||||||  | | ||||||||||||| ||  |||||||||||| |||||    
T  44920989 aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagagttt 44921059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 40016624 - 40016687
Alignment:
Q  271 aaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||| || || | ||||||||    
T  40016624 aaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaa 40016687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 22966564 - 22966621
Alignment:
Q  277 ttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| ||||||||| |||||| | ||||||||||||| || || ||||||||||    
T  22966564 ttactaatgaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaa 22966621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 7702461 - 7702525
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||| |||| |||||||| |||||||||||||  ||||||||||||| || || | ||||||||    
T  7702461 aaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaa 7702525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 26734777 - 26734833
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtcc 323  Q
    ||||||||| ||| ||||||||||||| || ||||||  |||||||||||| |||||    
T  26734777 aagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaaagtcc 26734833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 6403622 - 6403703
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||    
T  6403622 aagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagcccgtgttattaaaaagcttcagtaaca 6403703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 29553658 - 29553728
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaag 337  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| || ||  |||||||||||||||    
T  29553658 aagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaaagcgcgtgttactaaaaag 29553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 28249146 - 28249079
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||    
T  28249146 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 28249079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 45356183 - 45356116
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||    
T  45356183 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 45356116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 6801898 - 6801828
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||| || || |||||||||| |||||    
T  6801898 aaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagagttt 6801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 17634542 - 17634475
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| ||||||||||||||||| ||||| |||| |||||| |||||| || |||||||||||||    
T  17634542 aagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaa 17634475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 19369981 - 19369908
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||| | |||| | || |||||||||| || |||||||||||||||| |||||    
T  19369981 aagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttt 19369908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 19448477 - 19448550
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||| | |||| | || |||||||||| || |||||||||||||||| |||||    
T  19448477 aagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttt 19448550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 19532599 - 19532526
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||| | |||| | || |||||||||| || |||||||||||||||| |||||    
T  19532599 aagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttt 19532526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 5000717 - 5000757
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggt 316  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  5000717 gttactaattaaatttagtaacatttgagcaatagttaggt 5000757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 25637673 - 25637740
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||  |||||||||||||||||| |||| | || ||||||||||||| || |||||||||||||    
T  25637673 aagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaa 25637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 25638836 - 25638903
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| |  || ||||||||||    
T  25638836 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaa 25638903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 29345460 - 29345527
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||||||  ||||||||||||||||||||| ||||| ||||||||||||| || || | ||||||||    
T  29345460 aagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaa 29345527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 31347378 - 31347425
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttag 314  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||    
T  31347378 aagaaaaatgctactaattaaatttagtaacatttgatcaattgttag 31347425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 5651016 - 5650966
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||||| |||||||||| ||||||| ||||||||| |||||||||||||    
T  5651016 aagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggta 5650966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 5528772 - 5528845
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||||| |||| |  | |||||||||| || |||| ||||||||||| |||||    
T  5528772 aagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagagttt 5528845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 6223434 - 6223503
Alignment:
Q  271 aaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||| |||||| ||||||||||||||||||||   |||||||||||| ||  |||||||||||| |||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttt 6223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 16457402 - 16457321
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  16457402 aagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagctcgtgttactaaaaagcttcagtaaca 16457321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 26707888 - 26707969
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||| || ||||||||||    
T  26707888 aagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagaggttcagtaaca 26707969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 2943285 - 2943218
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||||  || |||||||||||||    
T  2943285 aagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaa 2943218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 13846021 - 13846088
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||    
T  13846021 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 13846088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 1628018 - 1627945
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    ||||||||  |||||||||||||||||||||| |||| ||||||||| ||| |||||||||||| ||| |||||    
T  1628018 aagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagagttt 1627945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 2550195 - 2550262
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || | |||||||||||    
T  2550195 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaa 2550262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 7407825 - 7407758
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||||||  ||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||    
T  7407825 aagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 7407758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 9633510 - 9633440
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    ||||| ||||||||||||||||||| |||||| | ||||||||||||| || || |||||||||| |||||    
T  9633510 aaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagagttt 9633440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 1613284 - 1613208
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcag 343  Q
    |||||||| |||||||| |||||||||||||| |||| ||||| ||||||| || || |||||||||| || |||||    
T  1613284 aagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaatagcttcag 1613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 26735681 - 26735744
Alignment:
Q  285 taaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||||||||||||||| ||||||||||||| | ||| |||||||||| || |||| |||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagagcttcaataaca 26735744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 5498507 - 5498557
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||||| |||||||||||||||||||||| | ||| |||||||||||||    
T  5498507 aagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggta 5498557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 27713507 - 27713462
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttagg 315  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||    
T  27713507 aaaaaagttactaattaaatttagtaacatttaaataattgttagg 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 36035329 - 36035385
Alignment:
Q  278 tactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||||||||||||||||||| |||  ||||||||||||| ||  ||||||||||||    
T  36035329 tactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaa 36035385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 1654605 - 1654672
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||| ||| || | |||||| ||||    
T  1654605 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaa 1654672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 27259512 - 27259474
Alignment:
Q  271 aaaaagttactaattaaatttagtaacatttgagcaatt 309  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  27259512 aaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 12189981 - 12190060
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaa 346  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||| |||||    
T  12189981 aagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaagagttttagtaa 12190060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 3399653 - 3399732
Alignment:
Q  269 gaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||| | ||  |||||||||| || ||| ||||||    
T  3399653 gaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaatagcttcggtaaca 3399732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 16222807 - 16222880
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| ||||||||| ||||||||||||| ||||  |||||||||||| || ||||||||||||| |||||    
T  16222807 aagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaagagttt 16222880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 897484 - 897550
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| ||| ||||||||||||||||||| |||| ||||||||||||| ||| | ||||||||||    
T  897484 aagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggta-agttcatgttactaaa 897550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 13208641 - 13208708
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||||| || |||| | ||||||||||| |  |||||||||||||    
T  13208641 aagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaa 13208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 28636932 - 28636987
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtc 322  Q
    |||||||| |||||||||| |||||||||||||||||  |||||||||||| ||||    
T  28636932 aagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtc 28636987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 1843981 - 1844031
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||||| |||||| ||| ||||||||||||||||| |||||||||||||    
T  1843981 aagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggta 1844031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 5911735 - 5911685
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||||| |||||| |||||||||||||||| |||| |||||||||||||    
T  5911735 aagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggta 5911685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 15214356 - 15214415
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtg 326  Q
    ||||||||  |||||||||||||||||||| |||||| |||||||| |||| ||| ||||    
T  15214356 aagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaagttcgtg 15214415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 15204623 - 15204673
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||||| ||| |||| |||||||||||||| |||| |||||||||||||    
T  15204623 aagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggta 15204673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 16734834 - 16734901
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||    
T  16734834 aagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaa 16734901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 23264567 - 23264491
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcag 343  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||||||| | |||||||||||||| || |||||    
T  23264567 aagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaagagcttcag 23264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 29667987 - 29667936
Alignment:
Q  266 aaagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  29667987 aaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggta 29667936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 4485625 - 4485555
Alignment:
Q  278 tactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||||||||||||||| ||||||  |||||||||||| ||||||||||| |||| ||||| |||||||    
T  4485625 tactaattaaatttagtaatatttgaataattgttaggtaaagtccgtgttattaaatagttttagtaaca 4485555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 15361744 - 15361817
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || | |||||||||||| ||||    
T  15361744 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttt 15361817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 11936838 - 11936771
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| |||||||||| || || |||||||||||||    
T  11936838 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 11936771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 11948818 - 11948751
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| |||| |||| |||||||||| || || |||||||||||||    
T  11948818 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 11948751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 23904423 - 23904373
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  23904423 aagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggta 23904373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 6684123 - 6684195
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| ||||||||||||||||||||||| | || | ||||||||||| ||||| |||||||||| |||||    
T  6684123 aagaaaaatgttactaattaaatttagtaacactcgaac-attgttaggtaaagtccatgttactaaagagttt 6684195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 9631226 - 9631161
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttacta 332  Q
    ||||| || |||||||| ||||||||||||||||||| ||||||||||| |||| || ||||||||    
T  9631226 aagaagaacgttactaagtaaatttagtaacatttgaacaattgttaggcatagcccctgttacta 9631161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 12591862 - 12591935
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||| |||||||||||||||||  | || ||||||||||||| || ||||||||||||| |||||    
T  12591862 aagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagagttt 12591935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 14669417 - 14669344
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||| | |||| | ||  |||||||||||| |||||||||||||||| |||||    
T  14669417 aagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagagttt 14669344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 2941044 - 2941108
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||||||  ||||||||||||||||||| ||||||||| |||  |||||||||||| ||||    
T  2941044 gttactaattatgtttagtaacatttgagcaaatgttaggtaaagtttgtgttactaaaatgttt 2941108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 17719794 - 17719721
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||| ||| | |||| | || |||||||||| || |||||||||||||||| |||||    
T  17719794 aagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttt 17719721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 34374854 - 34374935
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagc--aattgttaggtatagtccgtgttactaaaaagtttcagtaa 346  Q
    |||||||| ||||||||||| |||| ||||||||||| |  |||||||||| | | || ||||||||||| ||||| |||||    
T  34374854 aagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaaatctgtgttactaaagagtttgagtaa 34374935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 7601395 - 7601324
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||| ||| || | ||||||||||| ||| ||||||||| ||||||||||||||||   |||||||||||    
T  7601395 gttactatttagatcttgtaacatttga-caaatgttaggtaaagtccgtgttactaaatgatttcagtaaca 7601324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 10935850 - 10935802
Alignment:
Q  269 gaaaaaagttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    |||||| ||||||||||| ||  |||||||||||| |||||||||||||    
T  10935850 gaaaaatgttactaattatatccagtaacatttgaacaattgttaggta 10935802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 6728 - 6801
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||||| |||| |||| ||||||||||||| || | |||||||||||| ||||    
T  6728 aagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatgttt 6801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 26608610 - 26608543
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||||| || || || ||||||||||    
T  26608610 aagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaa 26608543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 9242555 - 9242482
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||  |||||||||||||||| |||||| |||| |||||||||| || ||||| |||||||||| |||||    
T  9242555 aagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagagttt 9242482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 26225049 - 26224976
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| | ||||||||||||||||||||| |||| ||||| ||||||| || | ||||||||||| |||||    
T  26225049 aagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaagccggtgttactaaagagttt 26224976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 3234354 - 3234438
Alignment:
Q  265 taaagaaaaaagttactaattaaatttagtaacatttgagcaattg-ttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    |||| ||||| | |||||| | ||||||||||||||||| |||||  ||||||| |||||||||||||||| || ||||||||||    
T  3234354 taaaaaaaaatggtactaaattaatttagtaacatttgaccaatttattaggtaaagtccgtgttactaaatagcttcagtaaca 3234438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 4685474 - 4685407
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||| ||||||||||||| |||| |||| ||||||||||||| || |||| ||||||||    
T  4685474 aagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaa 4685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 30089764 - 30089831
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||| | || || ||||||||||    
T  30089764 aagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaa 30089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 26205486 - 26205413
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| ||||||||||||||||||||||| ||||  ||||| |||||| ||   ||||||||||| |||||    
T  26205486 aagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaagctggtgttactaaagagttt 26205413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 10022156 - 10022220
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||| |||||||||||| ||||||||||  ||| ||||||||||||| ||  ||||||||||||    
T  10022156 aaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaagctcgtgttactaaa 10022220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 16086525 - 16086597
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||||||||||||| ||||||||||  |||||||||||| ||  | ||||||| || || ||||||||||    
T  16086525 gttactaattaaatttaataacatttgaataattgttaggtaaagctcatgttacttaatagcttcagtaaca 16086597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 27135957 - 27136039
Alignment:
Q  266 aaagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||||| |||| | |||| || || |||||||||| |||||||||| || || | ||||||||||| |||||| ||||||    
T  27135957 aaagaaaaatgttattgattatatctaataacatttgaacaattgttagataaagcctgtgttactaaagagtttcggtaaca 27136039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 16170309 - 16170350
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggta 317  Q
    ||||||||||||||||||||||| || | |||||||||||||    
T  16170309 gttactaattaaatttagtaacacttaaacaattgttaggta 16170350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 20277417 - 20277364
Alignment:
Q  281 taattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    ||||||||||||||||||||| | ||||||||||||| ||  | ||||||||||    
T  20277417 taattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaa 20277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 4881140 - 4881073
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||| |||||||||||||| |||||   |||||||||||| ||||||||||||||||    
T  4881140 aagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaa 4881073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 24559066 - 24558999
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||||||||||||| | |||||||||||  | | |||||||||||    
T  24559066 aagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaacggctgtgttactaaa 24558999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 43600296 - 43600363
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||||| |||||||||||||||||| || | |||| ||||||||||||| || |||||||||||||    
T  43600296 aagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaa 43600363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 48464067 - 48464118
Alignment:
Q  265 taaagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggt 316  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  48464067 taaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 1685023 - 1684950
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||| | |||| | || |||||||||| || |||||||||||||||| |||||    
T  1685023 aagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagagttt 1684950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 47066105 - 47066032
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||| ||||||||||||||||||  ||| ||||||||||||| || ||||||||| ||| |||||    
T  47066105 aagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagagttt 47066032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 1152073 - 1152146
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||||||||||||||| | |||| |  | |||||||||| || |||||||||||||||| |||||    
T  1152073 aagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaagagttt 1152146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 4904209 - 4904144
Alignment:
Q  269 gaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||||| |||||| ||||||||||||||||||||  ||||||||||||| ||  | ||||||||||    
T  4904209 gaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaa 4904144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 53300380 - 53300453
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||| |||| ||||||||||||||||||  | | ||||||||||||| || ||||||||| ||| |||||    
T  53300380 aagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagagttt 53300453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 21317485 - 21317548
Alignment:
Q  285 taaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||||||||||||||| | ||||||||||||| || | |||||||||||| | |||| |||||    
T  21317485 taaatttagtaacatttcaacaattgttaggtaaaggctgtgttactaaaatgcttcactaaca 21317548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 21539338 - 21539276
Alignment:
Q  271 aaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaa 334  Q
    |||| |||||| ||||||||||||||||||| | |||||||||| || ||||| ||||||||||    
T  21539338 aaaatgttactgattaaatttagtaacatttaaacaattgttagata-agtccttgttactaaa 21539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 37751058 - 37751014
Alignment:
Q  270 aaaaaagttactaattaaatttagtaacatttgagcaattgttag 314  Q
    ||||| ||||||||||||| | ||||||||||| |||||||||||    
T  37751058 aaaaatgttactaattaaaatcagtaacatttgcgcaattgttag 37751014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 446345 - 446273
Alignment:
Q  276 gttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaaca 348  Q
    ||||| |||||||||| ||||||||||| ||||||||||| | ||||| | |||||||| || || |||||||    
T  446345 gttaccaattaaatttggtaacatttgaacaattgttaggaaaagtccatattactaaagagctttagtaaca 446273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 818 - 745
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||  |||||||||||||||| | |||| | || |||||||||| || ||||| |||||||||| |||||    
T  818 aagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttt 745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 40769 - 40696
Alignment:
Q  267 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagttt 340  Q
    |||||||  |||||||||||||||| | |||| | || |||||||||| || ||||| |||||||||| |||||    
T  40769 aagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagagttt 40696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University