View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6327_low_16 (Length: 315)
Name: NF6327_low_16
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 83 - 299
Target Start/End: Original strand, 30162918 - 30163132
Alignment:
| Q |
83 |
ttcttctaactttactatatattgactgttaataatgtttgatgccttgccttgaaacgttagaactgctactgctaggacctagggacaatgttggatt |
182 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
30162918 |
ttcttctaactttactagatattgactgttaataatgttttatgtcttgccttgaaacgttagaactgctactgctagggcctggggacaatgttggatt |
30163017 |
T |
|
| Q |
183 |
tatatgggactctgttgcactctatgcataagctctttaactctctgaaagttaaacgcttttcgttttgcagcatcaaacaaaaagtatatgcctcgag |
282 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
30163018 |
tatatgggactctgttgcactctatgtataagctctttta--ctctgaaagttaaatgcttttcgttttaaagcatcaaacaaaaagtatatgcctcaag |
30163115 |
T |
|
| Q |
283 |
aaaaattggagagttta |
299 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30163116 |
aaaaattggagagttta |
30163132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 30162789 - 30162859
Alignment:
| Q |
18 |
aaattttggtacttgtagtttgatgtattgagagcatcaatttctttctcaactctatgttgagattcttc |
88 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30162789 |
aaattttggtacttgtagtttaatgtattgagagcatcaatttctttctgaactctatgttgagattcttc |
30162859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 25488663 - 25488598
Alignment:
| Q |
22 |
tttggtacttgtagtttgatgtattgagagcatcaatttctttctcaactctatgttgagattctt |
87 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
25488663 |
tttggtacttgtagtttgatagattgagaacatgaatttctttctaaactctatgttgagaatctt |
25488598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 25384757 - 25384711
Alignment:
| Q |
156 |
gctaggacctagggacaatgttggatttatatgggactctgttgcac |
202 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25384757 |
gctagggcctagcgacaatgttggatttatatgggactctgttgcac |
25384711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 25798977 - 25798912
Alignment:
| Q |
22 |
tttggtacttgtagtttgatgtattgagagcatcaatttctttctcaactctatgttgagattctt |
87 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| ||||||||||| || |||||||||||| |||| |
|
|
| T |
25798977 |
tttggtacttgtagtttgatagattgagaacatgaatttctttctaaattctatgttgagaatctt |
25798912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 25384897 - 25384842
Alignment:
| Q |
32 |
gtagtttgatgtattgagagcatcaatttctttctcaactctatgttgagattctt |
87 |
Q |
| |
|
||||||||||| ||| ||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
25384897 |
gtagtttgatggattaagaacacgaatttctttctaaactctatgttgagattctt |
25384842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 13695291 - 13695347
Alignment:
| Q |
22 |
tttggtacttgtagtttgatgtattgagagcatcaatttctttctcaactctatgtt |
78 |
Q |
| |
|
||||||||||||| ||||||| ||||| | || ||||||||||||||||| ||||| |
|
|
| T |
13695291 |
tttggtacttgtaatttgatggattgaaaacaggaatttctttctcaactcgatgtt |
13695347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University