View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_low_19 (Length: 286)

Name: NF6327_low_19
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_low_19
NF6327_low_19
[»] chr6 (10 HSPs)
chr6 (17-276)||(27878624-27878883)
chr6 (17-191)||(1234844-1235018)
chr6 (17-191)||(26976131-26976305)
chr6 (17-191)||(27873990-27874164)
chr6 (17-191)||(18968019-18968194)
chr6 (140-276)||(30967674-30967810)
chr6 (17-192)||(30986651-30986830)
chr6 (17-145)||(30966795-30966923)
chr6 (11-186)||(21966688-21966860)
chr6 (34-276)||(23012415-23012656)
[»] chr8 (4 HSPs)
chr8 (17-276)||(9444007-9444266)
chr8 (17-191)||(9439372-9439546)
chr8 (118-174)||(4799315-4799371)
chr8 (119-192)||(4844870-4844943)
[»] chr5 (5 HSPs)
chr5 (17-276)||(41718553-41718812)
chr5 (17-191)||(41723279-41723453)
chr5 (17-191)||(34360099-34360273)
chr5 (17-191)||(29585300-29585474)
chr5 (17-172)||(34352391-34352546)
[»] chr4 (14 HSPs)
chr4 (17-276)||(48701736-48701995)
chr4 (17-276)||(42266046-42266305)
chr4 (17-276)||(30950098-30950356)
chr4 (17-193)||(42270765-42270941)
chr4 (17-185)||(24520031-24520199)
chr4 (17-191)||(48697131-48697306)
chr4 (17-192)||(30945476-30945650)
chr4 (17-191)||(10427422-10427597)
chr4 (78-178)||(48782932-48783031)
chr4 (40-138)||(17248015-17248112)
chr4 (112-189)||(36615361-36615438)
chr4 (112-180)||(30165900-30165968)
chr4 (87-125)||(1979567-1979604)
chr4 (171-212)||(1999189-1999230)
[»] chr3 (9 HSPs)
chr3 (17-276)||(5823190-5823449)
chr3 (31-276)||(2817178-2817422)
chr3 (17-191)||(5818513-5818687)
chr3 (17-191)||(54546027-54546200)
chr3 (38-191)||(24659136-24659287)
chr3 (77-183)||(4579254-4579360)
chr3 (31-177)||(31204781-31204926)
chr3 (147-203)||(25877086-25877142)
chr3 (17-153)||(35977124-35977258)
[»] chr2 (12 HSPs)
chr2 (28-276)||(825632-825881)
chr2 (17-269)||(15603020-15603272)
chr2 (17-182)||(5198664-5198829)
chr2 (28-191)||(830288-830452)
chr2 (31-182)||(30396920-30397070)
chr2 (17-184)||(28715905-28716070)
chr2 (31-191)||(31592910-31593068)
chr2 (27-269)||(13843719-13843958)
chr2 (56-171)||(12175768-12175881)
chr2 (120-191)||(13840240-13840311)
chr2 (127-176)||(9358158-9358207)
chr2 (50-130)||(42117798-42117876)
[»] chr7 (7 HSPs)
chr7 (17-186)||(16183636-16183806)
chr7 (33-215)||(8139940-8140121)
chr7 (17-271)||(8138384-8138633)
chr7 (27-191)||(30235175-30235339)
chr7 (188-276)||(25441073-25441161)
chr7 (33-178)||(5102606-5102749)
chr7 (76-191)||(36528415-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (17-191)||(27226-27401)
[»] chr1 (3 HSPs)
chr1 (17-191)||(46191373-46191546)
chr1 (17-191)||(4130227-4130401)
chr1 (31-186)||(30697120-30697274)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 27878883 - 27878624
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878883 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 27878784  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27878783 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccctggttcgta 27878684  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878683 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 27878624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 1234844 - 1235018
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234844 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 1234943  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234944 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 1235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 26976305 - 26976131
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26976305 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaata 26976206  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976205 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 26976131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 27874164 - 27873990
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27874164 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaata 27874065  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27874064 ttgtgtgttcagttcctcttttctcttctcttattttagatgcgtgataatattttgttactctggtacctaaca 27873990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 18968019 - 18968194
Alignment:
Q  17 ttagagtgaagtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18968019 ttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 18968118  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18968119 attatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 18968194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 30967674 - 30967810
Alignment:
Q  140 tcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  30967674 tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac 30967773  T
Q  240 tagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30967774 tagtggtgtggtaagaaaaatcttagtatgctctgtg 30967810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 30986651 - 30986830
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttcc--ccttatttgttgaggggt---ttccacgta 111  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||   |||||||||    
T  30986651 ttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgttgaggggtactttccacgta 30986750  T
Q  112 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag 192  Q
    || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  30986751 aa-tattgtgcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaacag 30986830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 30966795 - 30966923
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| || || ||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||| ||||    
T  30966795 ttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttgatgggtttccacgt-aaat 30966893  T
Q  116 attgtgtgttcagttcctcttttctcgtct 145  Q
    ||||||||||||||||||||||||||||||    
T  30966894 attgtgtgttcagttcctcttttctcgtct 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 21966688 - 21966860
Alignment:
Q  11 ttgaaattagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt 110  Q
    |||||||||||| || ||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| ||||||||||||||| |    
T  21966688 ttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgaggggtttccacat 21966786  T
Q  111 aaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 186  Q
     ||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| |||||||    
T  21966787 -aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc 21966860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 276
Target Start/End: Complemental strand, 23012656 - 23012415
Alignment:
Q  34 aatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcct 133  Q
    |||||||  |||||||||||||||||||||||||||||  |||||||| ||| | |||||| || | ||||||||||||| || |||||||||| ||| |    
T  23012656 aatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgtgttcaattctt 23012560  T
Q  134 ctttt-ctcgtctcttattttagctgcgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctg 231  Q
    ||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||| |||| ||  ||  ||||| |||| |||||| |||| |||| |      
T  23012559 ctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttgttgttccacat 23012460  T
Q  232 tgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
      | |||| |||| |||||||||||||| ||||||||||| ||||    
T  23012459 caacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtg 23012415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 9444266 - 9444007
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444266 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 9444167  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  9444166 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgta 9444067  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444066 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 9444007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 9439546 - 9439372
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439546 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 9439447  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439446 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 9439372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
Q  118 tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt 174  Q
    |||||||||| || |||||||||| |||||||||||||| | |||||||||||||||    
T  4799315 tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt 4799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 4844870 - 4844943
Alignment:
Q  119 gtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag 192  Q
    ||||||||| ||| |||| ||||  ||||||||||  | |||||||||| ||||||| |||| |||||||||||    
T  4844870 gtgtgttcaattcttcttatctcaactcttatttttacagcgtgataatgttttgtttctcttgtacctaacag 4844943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 41718553 - 41718812
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718553 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 41718652  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  41718653 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgta 41718752  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718753 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 41718812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 41723279 - 41723453
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723279 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 41723378  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723379 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 41723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 34360099 - 34360273
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34360099 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaata 34360198  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360199 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 34360273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 29585474 - 29585300
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585474 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 29585375  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  29585374 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctgatacctaaca 29585300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 34352391 - 34352546
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352391 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 34352490  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352491 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt 34352546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 48701995 - 48701736
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701995 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 48701896  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  48701895 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgta 48701796  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701795 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 48701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 42266046 - 42266305
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266046 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 42266145  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  42266146 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtatctaacagtggtatcagagccgctggttcgta 42266245  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266246 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 42266305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 30950356 - 30950098
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30950356 ttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccc-ttatttgttgaggggtttccacgtaaaata 30950258  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  30950257 ttgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagctcctggttcgta 30950158  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950157 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 30950098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 42270765 - 42270941
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270765 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 42270864  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42270865 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtatctaacagt 42270941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 24520199 - 24520031
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520199 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 24520100  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtac 185  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24520099 ttgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggtac 24520031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 48697306 - 48697131
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48697306 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaat 48697207  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697206 attgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctggtacctaaca 48697131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 30945650 - 30945476
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  30945650 ttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgattttttccc-ttatttgttgaggggtttccacgtaaaata 30945552  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag 192  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30945551 ttgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacctaacag 30945476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 10427422 - 10427597
Alignment:
Q  17 ttagagtgaagtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| |||||| ||||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  10427422 ttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttgaggggtttccgcgtaaaat 10427521  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  10427522 attgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaaca 10427597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 48782932 - 48783031
Alignment:
Q  78 tttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac 177  Q
    |||||||| ||||||||||||   |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||   |||||||||||||||| |||    
T  48782932 tttttccctttatttgttgagaaatttccacgtaaa-tattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatac 48783030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
Q  40 ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt 138  Q
    ||||||||| |||||||||| |||||||  || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| |||||||    
T  17248015 ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt 17248112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
Q  112 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa 189  Q
    ||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||||    
T  36615438 aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa 36615361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
Q  112 aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct 180  Q
    ||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| ||||||||||||||    
T  30165900 aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct 30165968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
Q  87 ttatttgttgaggggtttccacgtaaaatattgtgtgtt 125  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1979567 ttatttgttgaggggtttccacgt-aaatattgtgtgtt 1979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
Q  171 ttgttactctggtacctaacagtggtatcagagcccttggtt 212  Q
    |||||| |||| |||||||||||||||||||||| |||||||    
T  1999189 ttgttattctgatacctaacagtggtatcagagcacttggtt 1999230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 276
Target Start/End: Complemental strand, 5823449 - 5823190
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823449 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 5823350  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  5823349 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgta 5823250  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823249 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 5823190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 31 - 276
Target Start/End: Complemental strand, 2817422 - 2817178
Alignment:
Q  31 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 130  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2817422 tgtaatttcttccacttagtgagagttctttactcttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 2817324  T
Q  131 cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgct 230  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||     
T  2817323 cctcttttctcttctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgca 2817224  T
Q  231 gtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    || |||||||||||| ||||||||||||||||||||||||| ||||    
T  2817223 gtaataaactagtggtgtggtaagaaaaatcttagtatgctatgtg 2817178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 5818687 - 5818513
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5818687 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaata 5818588  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5818587 ttgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca 5818513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 54546027 - 54546200
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54546027 ttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccccgtggttttttccccttatttgttgaggggtttccacgt-aaata 54546125  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54546126 ttgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtacctaaca 54546200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 191
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
Q  38 tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt 137  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24659287 tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt 24659190  T
Q  138 tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  24659189 tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca 24659136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
Q  77 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4579254 ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta 4579353  T
Q  177 ctctggt 183  Q
    |||||||    
T  4579354 ctctggt 4579360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 31204926 - 31204781
Alignment:
Q  31 tgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagt 129  Q
    |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  31204926 tgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtttccacgt-aaatattgtgagttcagt 31204828  T
Q  130 tcctcttttctcgtctcttattttagctgcgtgataatattttgttac 177  Q
    ||||||||| || |||||| ||||| ||||||| ||||||||||||||    
T  31204827 tcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac 31204781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
Q  147 ttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagag 203  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  25877086 ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag 25877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 35977124 - 35977258
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| |||||| |||||||| |||||||||||||||  || | ||||||||||  |||  ||||||||  ||| |||||| || |||  |||| ||||    
T  35977124 ttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgttgatggttttttacgt-aaat 35977220  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttatttt 153  Q
    ||||| |||||| || ||||||||||  ||||||||||    
T  35977221 attgtttgttcaatttctcttttctcacctcttatttt 35977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 825632 - 825881
Alignment:
Q  28 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  825632 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc 825731  T
Q  127 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  825732 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc 825831  T
Q  227 cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  825832 cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtg 825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 15603020 - 15603272
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603020 ttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 15603119  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||   ||| ||||||| |||||||| | ||||||||||    
T  15603120 ttgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactctcacacccaacagtgctatcagagtcattggttcgta 15603219  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 269  Q
      |||||||||| ||  | ||||| |||||||||||||||| |||||||||||    
T  15603220 attgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagtatg 15603272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 5198829 - 5198664
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198829 ttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 5198730  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198729 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg 5198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 830288 - 830452
Alignment:
Q  28 tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 126  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  830288 tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 830387  T
Q  127 agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  830388 agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca 830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 30397070 - 30396920
Alignment:
Q  31 tgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagt 129  Q
    |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||||| ||| ||||||| |||||||||||    
T  30397070 tgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtttcaacg-aaaatat-gtgtgttcagt 30396973  T
Q  130 tcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg 182  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30396972 tcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg 30396920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 28715905 - 28716070
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||||||||||||||||||||| |||||||||||||| ||||  |  ||||||||| ||||||||||  ||||||||||||||||||| ||    
T  28715905 ttagagagatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtggttttt-ccccttatttaatgaggggtttccacgtaaa-ta 28716002  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggta 184  Q
    ||||||||||| |||||||||| |||||||||||||||  || |||||||||||||||||||||||||    
T  28716003 ttgtgtgttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctggta 28716070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
Q  31 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 130  Q
    ||||||||||| |  ||||||||||||||||||||||  |  ||||||||||  | |||||| ||||| | |||||||||||| |||||| ||||  |||    
T  31593068 tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt 31592971  T
Q  131 cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||| ||||    
T  31592970 cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca 31592910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 269
Target Start/End: Complemental strand, 13843958 - 13843719
Alignment:
Q  27 gtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc 126  Q
    |||||||||||||||||||||| ||||| |||| |||| ||  ||  |  ||||| | ||||||||||||||||||||||||||||| ||||||||  ||    
T  13843958 gtcctgtaatttcttccacttaatgaaaattctatacttttaacctataattttt-ctccttatttgttgaggggtttccacgtaaa-tattgtgt--tc 13843863  T
Q  127 agttc-ctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttatt 225  Q
    | ||  || |||||||    |||| ||||  | |||||||||||||| |||||||| || | |  |||||||| |||||| |||| ||||    ||| ||    
T  13843862 atttttcttttttctcaaaacttactttacttacgtgataatattttattactctgatagccacaagtggtattagagccattggctcgtgatagttgtt 13843763  T
Q  226 ccgctgtgataaactagtggagtggtaagaaaaatcttagtatg 269  Q
    |||||||   ||||| ||||||||||||||||||| ||||||||    
T  13843762 ccgctgtagcaaactggtggagtggtaagaaaaatattagtatg 13843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
Q  56 ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag 155  Q
    ||||||||||||| ||  | |||||||||  |||||| |||||  ||||||||  ||||||||||||||||| || || |||| || ||| |||||||||    
T  12175881 ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag 12175784  T
Q  156 ctgcgtgataatattt 171  Q
     |||||||||||||||    
T  12175783 ttgcgtgataatattt 12175768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 13840311 - 13840240
Alignment:
Q  120 tgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||||||| ||||||| |||||| ||| ||||| ||  | |||||||||||||||||| ||||||||| ||||    
T  13840311 tgtgttcggttcctcctttctcatcttttattataattacgtgataatattttgttattctggtacccaaca 13840240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
Q  127 agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta 176  Q
    ||||| ||||||||||||| || |||||||||||| ||||||||| ||||    
T  9358207 agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta 9358158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 42117798 - 42117876
Alignment:
Q  50 tgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 130  Q
    |||||||| |||||| ||| | ||||||||| ||||||||||  ||||| |||||| |||| ||||||||| |||||||||    
T  42117798 tgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgt-aaatattgtatgttcagtt 42117876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 16183806 - 16183636
Alignment:
Q  17 ttagagtgaagtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183806 ttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 16183707  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183706 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 16183636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 8140121 - 8139940
Alignment:
Q  33 taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc 132  Q
    |||||||||||||| |||||||||| |||| |||| |||| ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||| |    
T  8140121 taatttcttccactgagtgaaagttttctaatcttaccccatggttttctccccttatttgttgaggggtttccacataaa-tattgtgcgttcagtttc 8140023  T
Q  133 tcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgt 215  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  8140022 tcttttctcatctcttattttagctgtgtgataatattttgttactctggtacccaacagtggtattagagccattggttcgt 8139940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 8138633 - 8138384
Alignment:
Q  17 ttagagtgaagtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaata 116  Q
    |||||| || ||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||||||||| |||  ||    
T  8138633 ttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggtttccacataat-ta 8138535  T
Q  117 ttgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgta 216  Q
     |||||||| ||||  |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| |||||| |||||||||     
T  8138534 ctgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagccattggttcgtt 8138435  T
Q  217 gctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct 271  Q
    |  ||||||| || |     |||| || |||||||||||||||||||||||||||    
T  8138434 gtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct 8138384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 30235175 - 30235339
Alignment:
Q  27 gtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaaatattgtgtgtt 125  Q
    |||||||||||||||| | ||| |||||||| |||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  30235175 gtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttccccttattcgttgaggggtttccacgtaaa-tattgtgtgtt 30235273  T
Q  126 cagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    |||||||||||||||| | | |||||||||||| || ||||||||||| |||||||||||| ||||    
T  30235274 cagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacccaaca 30235339  T

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Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 25441073 - 25441161
Alignment:
Q  188 aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 276  Q
    |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25441073 aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg 25441161  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
Q  33 taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc 132  Q
    |||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || || ||||||| ||| || ||| ||    
T  5102749 taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc 5102653  T
Q  133 tc-ttttctcgtctcttattttagctgcgtgataatattttgttact 178  Q
    || ||||||| ||| ||||||||| || |||||||||||||||||||    
T  5102652 tctttttctcatcttttattttagttgagtgataatattttgttact 5102606  T

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Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
Q  76 gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt 175  Q
    |||||||  ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| ||  || ||||||    
T  36528529 gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt 36528431  T
Q  176 actctggtacctaaca 191  Q
    |||||| |||| ||||    
T  36528430 actctgatacccaaca 36528415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 27401 - 27226
Alignment:
Q  17 ttagagtgaagtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27401 ttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaagt 27302  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27301 attgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 27226  T

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Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 46191373 - 46191546
Alignment:
Q  17 ttagagtgaagtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46191373 ttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttgaggggtttccacgtaaaat 46191472  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
    ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  46191473 at--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaaca 46191546  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 4130227 - 4130401
Alignment:
Q  17 ttagagtgaagtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaat 115  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  4130227 ttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatttccacgt-aaat 4130325  T
Q  116 attgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca 191  Q
     |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||    
T  4130326 tttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca 4130401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 30697274 - 30697120
Alignment:
Q  31 tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 130  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  30697274 tgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggtttccacgt-aaatattttgtgttaagtt 30697176  T
Q  131 cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc 186  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30697175 cctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc 30697120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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