View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_2 (Length: 617)
Name: NF6327_low_2
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 248 - 601
Target Start/End: Original strand, 41747900 - 41748253
Alignment:
| Q |
248 |
tccggcgactcaacggcggccggtgatttgcaccgggaagaaatatcgtggagtgagacaaagaccttggggaaaatgggcggcggagataagagacccc |
347 |
Q |
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| T |
41747900 |
tccggcgactcaacggcggccggtgatttacaccgggaagaaatatcgtggagtgagacagagaccttggggaaaatgggcggcggagataagagacccc |
41747999 |
T |
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| Q |
348 |
aaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgc |
447 |
Q |
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| T |
41748000 |
aaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgc |
41748099 |
T |
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| Q |
448 |
ttacgaatttcattcaacccacgacaaagaaggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttcaatgttgtacttc |
547 |
Q |
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| T |
41748100 |
ttacgaatttcattcaacccacgacaaagaaggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttcaatgttgtacttc |
41748199 |
T |
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| Q |
548 |
ttcctcagaaggaggtgaatccgtaacagtaaaagacaatgttatcgttccaat |
601 |
Q |
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| T |
41748200 |
ttcctcagaaggaggtgaatccgtaacagtaaaagacaatgttatcgttccaat |
41748253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 41747662 - 41747841
Alignment:
| Q |
10 |
acatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaactatacaaatacgttacaccgaccctgacgccacggattcttcttc |
109 |
Q |
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| T |
41747662 |
acatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaactatacaaatacgttacaccgaccctgacgccacggattcttcttc |
41747761 |
T |
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| Q |
110 |
tgacgaagaagaaaatccaacacattccaattttacccctcgctgcagaatcaaaactttcatccacgacattgtgatcg |
189 |
Q |
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| T |
41747762 |
tgacgaagaagaaaatccaatacattccaatattacccctcgccgcagaatcaaaactttcatccacgacattgtgatcg |
41747841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 8584973 - 8585005
Alignment:
| Q |
366 |
tggttgggaacttacaacactgctgaagaagct |
398 |
Q |
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| T |
8584973 |
tggttgggaacttacaacagtgctgaagaagct |
8585005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 2361369 - 2361307
Alignment:
| Q |
284 |
gaagaaatatcgtggagtgagacaaagaccttggggaaaatgggcggcggagataagagaccc |
346 |
Q |
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| T |
2361369 |
gaagaaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagagaccc |
2361307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 13409881 - 13409927
Alignment:
| Q |
297 |
ggagtgagacaaagaccttggggaaaatgggcggcggagataagaga |
343 |
Q |
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| T |
13409881 |
ggagtgagacaaagaccatggggaaaatgggcagcagaaataagaga |
13409927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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