View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_22 (Length: 251)
Name: NF6327_low_22
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 44698329 - 44698451
Alignment:
| Q |
121 |
ctaatctttgattatgaataatctacatcaatctatcagacaaactaggaagtcttttgaaaaagttcaaactaaccgaaggcattgggttcctaaacat |
220 |
Q |
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| T |
44698329 |
ctaatctttgatcatgaataatctacatcaatctatcagacaaactaggaagtcttctgaaaaagttcaaactagccggaggcattgggttcctaaacat |
44698428 |
T |
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| Q |
221 |
tggatgacgaagatagtataatc |
243 |
Q |
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| T |
44698429 |
tggatgacgaagatagtagaatc |
44698451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46707930 - 46707891
Alignment:
| Q |
1 |
ccttacaattatcaaccaacacaaataaatcacattctct |
40 |
Q |
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| T |
46707930 |
ccttacaatcatcaaccaacacaaataaaccacattctct |
46707891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37543779 - 37543740
Alignment:
| Q |
1 |
ccttacaattatcaaccaacacaaataaatcacattctct |
40 |
Q |
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||||||||| ||||||||||||||||||| |||||||||| |
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| T |
37543779 |
ccttacaatcatcaaccaacacaaataaaccacattctct |
37543740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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