View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_24 (Length: 250)
Name: NF6327_low_24
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 12250087 - 12249848
Alignment:
| Q |
1 |
ctaaactccataaattttctcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctcttt |
100 |
Q |
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| T |
12250087 |
ctaaactccataaattttctcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctcttt |
12249988 |
T |
|
| Q |
101 |
gtttgccaagtattcaagagctagacatgtcagagaattccttccttcaaggcgagcttcctgaattgagttgcaatgcttttctcaataccttagatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12249987 |
gtttgccaagtattcaagagctagacatgtcagagaattcctaccttcaaggcgagcttcctgaattgagttgcaatgcttttctcactaccttagatct |
12249888 |
T |
|
| Q |
201 |
ctcagattgtggattccaagggccaattcctctgtccttt |
240 |
Q |
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| T |
12249887 |
ctcagattgtggattccaagggccaattcctctgtccttt |
12249848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 34231153 - 34231386
Alignment:
| Q |
3 |
aaactccataaattttctcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctctttgt |
102 |
Q |
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| T |
34231153 |
aaactccataaacttgctcttcaatcgatctttctctctggttactcttaatcttagagagacaatcttaagtggaaaattgaaaaagagcattctttgt |
34231252 |
T |
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| Q |
103 |
ttgccaagtattcaagagctagacatgtcagagaattccttccttcaaggcgagcttcctgaattgagttgcaatgcttttctcaataccttagatctct |
202 |
Q |
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| T |
34231253 |
ttaccaagtattcaagagctagatatgtcatataatgaccaccttgaaggccaacttccagaattgagctgtagtacttctctcattactttggatctct |
34231352 |
T |
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| Q |
203 |
cagattgtggattccaagggccaattcctctgtc |
236 |
Q |
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| T |
34231353 |
caggttgtggattccaagggtcaattcctctgtc |
34231386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 42125239 - 42125126
Alignment:
| Q |
19 |
ctcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgct-ctttgtttgccaagtattcaa |
117 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| | ||||||| || |||||||| |||||||||||| |
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| T |
42125239 |
ctcttcaaccaatcttcctctttggttactcttaatcttaaatcaacaggattaactggaaaact-gaaaagaagcctactttgtttaccaagtattcaa |
42125141 |
T |
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| Q |
118 |
gagctagacatgtca |
132 |
Q |
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||| |||| |||||| |
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| T |
42125140 |
gagttagatatgtca |
42125126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 41570372 - 41570490
Alignment:
| Q |
20 |
tcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctctttgtttgccaagtattcaaga |
119 |
Q |
| |
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|||||||||||||||||| |||| ||| ||||| |||| || ||||| |||||||||||| | ||||| || ||||||||| |||| ||||||||| |
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| T |
41570372 |
tcttcaataaatcttcctctttgattagtcttagtcttcaaagaacaggattaagtggaaattggaaaaataacattctttgtttaccaaatattcaaga |
41570471 |
T |
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| Q |
120 |
gctagacatgtcagagaat |
138 |
Q |
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|||||| |||||| ||||| |
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| T |
41570472 |
gctagatatgtcaaagaat |
41570490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 25521393 - 25521496
Alignment:
| Q |
29 |
aatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctctttgtttgccaagtattcaagagctagacat |
128 |
Q |
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||||||||| |||||||||||| |||||||||||||||| |||||| |||||||| |||| || ||||||||| |||||||||||||| |||| || |
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| T |
25521393 |
aatcttcctctttggttactctaaatcttaaatcaacaggattaagaggaaaattcaaaaggagcattctttgtttaccaagtattcaagaaatagatat |
25521492 |
T |
|
| Q |
129 |
gtca |
132 |
Q |
| |
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|||| |
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|
| T |
25521493 |
gtca |
25521496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 11120025 - 11119869
Alignment:
| Q |
19 |
ctcttcaataaatcttcctatttggttactcttaatcttaaatcaacagaattaagtggaaaattaaaaaagaatgctctttgtttgccaagtattcaag |
118 |
Q |
| |
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|||||||| ||||||||| |||||||| |||| ||||||| |||| ||||||||||| || || ||||| || ||||||||| ||||||||||||| |
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| T |
11120025 |
ctcttcaaccaatcttcctctttggttatacttagtcttaaagcaactgaattaagtgggaacttgaaaaataactttctttgtttaccaagtattcaag |
11119926 |
T |
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| Q |
119 |
agctagacatgtcagagaattccttccttcaaggcgagcttcctgaattgagttgca |
175 |
Q |
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||||| | ||||| || ||| || | || ||||| | ||||| ||||||||||||| |
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| T |
11119925 |
agctatatatgtcggataatcccaactttgaaggccaacttccagaattgagttgca |
11119869 |
T |
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