View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_26 (Length: 248)
Name: NF6327_low_26
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_26 |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: scaffold1301 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 576 - 344
Alignment:
| Q |
1 |
agaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgtgaacaactacaggaggatgaagcttcacaattcacat |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||| || ||| |||||||| || ||| ||| ||| | ||| |
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| T |
576 |
agaaacagccctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcatggacacctacaggaagacgaatcttgacattccactc |
477 |
T |
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| Q |
101 |
ttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagcgtacatgtatggttgaataggctcaaaaatgctgtct |
200 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
476 |
ttggaaaagctccagacagaactgctcaattttgaagttgtacctaatgatgatgctgttagcgtacatgtatggttgaacaggctcaaaaatgctgtct |
377 |
T |
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| Q |
201 |
cgaatgttaactatttgtttggtgatataaagt |
233 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
376 |
cgaatgttaactatttgtttggttatataaagt |
344 |
T |
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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 17310990 - 17311171
Alignment:
| Q |
1 |
agaaacagccctctcaacttgtgtaaaagtgttcttaaacaagattgtttctagcgtgttcgtgaacaactacaggaggatgaagcttcacaattcacat |
100 |
Q |
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||||||| |||||||||||| || ||||| | |||||||||||||||||||| | ||||||| ||||||||||||||| ||||||| | ||| | |
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| T |
17310990 |
agaaacactcctctcaacttgcgtcaaagtcatgttaaacaagattgtttctagtgagttcgtggacaactacaggaggacgaagcttgatgtttcgctc |
17311089 |
T |
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| Q |
101 |
ttggaaaagctccagacagagctgctcagttttgaagttgtacctaatgatgatgctgttagcgtacatgtatggttgaata |
182 |
Q |
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|||||||| ||| ||||||| ||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||| |
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| T |
17311090 |
ttggaaaatctcaagacagaactgctcagttttgaagttgtagttaacgatgatgctgttagtgtcaatgtatggttgaata |
17311171 |
T |
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