View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_27 (Length: 243)
Name: NF6327_low_27
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34328148 - 34328371
Alignment:
| Q |
1 |
cctttcaaatttaaaagaaattgttgaa-aaagatatatactatgaagcaccgacaccggacatgagattgaaaataatttgagaaaatagattaattaa |
99 |
Q |
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|||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34328148 |
cctttcaaatttaaaataaattgttgcagaaagatatatactatgaagcaccaacaccggacatgagattgaaaataatttgagaaaatagattaattaa |
34328247 |
T |
|
| Q |
100 |
atataaacatatgagtctgtttcatgtccaacatcgcagacaccttcatcaatagagaaagcaactaacaacttcactatcattaacaaaattggagaag |
199 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34328248 |
atataaacatatgattctgtttcgtgtccaacatcgcagacaccttcatcaatagagaaagcaactaacaacttcactatcattaacataattggagaag |
34328347 |
T |
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| Q |
200 |
gtggttttggacctgcatacaagg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
34328348 |
gtggttttggacctgcatacaagg |
34328371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 23561148 - 23561108
Alignment:
| Q |
184 |
aacaaaattggagaaggtggttttggacctgcatacaaggt |
224 |
Q |
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| T |
23561148 |
aacaagattggagaaggtggttttggacctgtatacaaggt |
23561108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 3979663 - 3979620
Alignment:
| Q |
183 |
taacaaaattggagaaggtggttttggacctgcatacaaggtga |
226 |
Q |
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| T |
3979663 |
taacaaacttggagaaggtggttttggaccggtatacaaggtga |
3979620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 31717082 - 31717112
Alignment:
| Q |
184 |
aacaaaattggagaaggtggttttggacctg |
214 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31717082 |
aacaaaattggagaaggtggttttggacctg |
31717112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 31722956 - 31722986
Alignment:
| Q |
184 |
aacaaaattggagaaggtggttttggacctg |
214 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31722956 |
aacaaaattggagaaggtggttttggacctg |
31722986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 31724309 - 31724339
Alignment:
| Q |
184 |
aacaaaattggagaaggtggttttggacctg |
214 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
31724309 |
aacaaaattggagaaggtggttttggacctg |
31724339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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