View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_28 (Length: 241)
Name: NF6327_low_28
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48533066 - 48532832
Alignment:
| Q |
1 |
tcaaacttttgtttctggtcgttgttcttccattccaattacttttaacttaatcaattatacatgaatgtatgtttcttatagctttcatttaattttg |
100 |
Q |
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| T |
48533066 |
tcaaacttttgtttctggtcgttgttcttctattccaattacttttaacttaatcaattatacatgaatgtatgtttcttatagctttcatttaattttg |
48532967 |
T |
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| Q |
101 |
tggctttctttattaagtaatcgttacaagctccattttttcggttctaagcttgaatggagcttagtcaagtgcttnnnnnnntcatgtttatccaact |
200 |
Q |
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| T |
48532966 |
tggctttctttattaagtgatcgttccaagctccattttttcggttctaagcttgaatggagcttaggcaagtgcttaaaaaaatcatgttcatccaact |
48532867 |
T |
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| Q |
201 |
attagtattttatgcaaattaaattcttcctcttc |
235 |
Q |
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| T |
48532866 |
attagtattttatgcaaattaaattcttcctcttc |
48532832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 48535900 - 48535797
Alignment:
| Q |
9 |
ttgtttctggtcgttgttcttccattccaattacttttaacttaatcaattatacatgaatgtatgtttcttatagctttcatttaattttgtggctttc |
108 |
Q |
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|||||| |||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
48535900 |
ttgtttttggtggttgttcttccattccaattacttttcact-aatcaattatatatgaatgtatgattcttatagctttcatttaattgtgtggttttc |
48535802 |
T |
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| Q |
109 |
tttat |
113 |
Q |
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||||| |
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| T |
48535801 |
tttat |
48535797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 48535745 - 48535654
Alignment:
| Q |
135 |
attttttcggttctaagcttgaatggagcttagtcaagtgcttnnnnnnntcatgtttatccaa-ctattagtattttatgcaaattaaatt |
225 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
48535745 |
atttttttggttctaagcttgaatggagcttaggcaagtgcttaaaaaaataatgttcatccaacctattagtattttattcaaattaaatt |
48535654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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