View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_3 (Length: 538)
Name: NF6327_low_3
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 26 - 530
Target Start/End: Complemental strand, 43118267 - 43117759
Alignment:
| Q |
26 |
tgggggttgaacttcgactcctctacttatgcatgtgagttctcaaatgactattgtcattttatctatctattaaaaaatgatttttattttacccttt |
125 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43118267 |
tgggggttgaacttcgactcctctacttatgcatatgagttctcaaatgactattgttattttatctatctattaaaaaatgatttttattttacccttt |
43118168 |
T |
|
| Q |
126 |
gaattgctatatcccaagtattagaatgtgtatgatgaaattttgatgatgtttataccctctgttataacaatatataaggttgtggctcggccaatat |
225 |
Q |
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| T |
43118167 |
gaattgctatatcccaagtattagaatgtgtatgatgaaattttgatgatgtttataccctctgttataacaatatataaggttgtggctcggccaatat |
43118068 |
T |
|
| Q |
226 |
tnnnnnnnnnnnnnnnnnnnnnnngagttaacaacaaatggaaacatataattcttcattcactta------aaacccatgtataatttatattatactc |
319 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43118067 |
tataaataaaataaaataaaaaatgagttaacaacaaatggaaacata--attcttcattcacttagtcctaaaacccatgtataatttatattatactc |
43117970 |
T |
|
| Q |
320 |
aattcattcacccgaacatctccattgaaaaatattcacctttgaaaacatgagaaatcattgcatcaaatttttcaacccgtgatatataatgcaatgt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43117969 |
aattcattcacccgaacatctccattgaaaaatattcacctttgaaaacatgagaaatcattgcatcaaatttttcgacccgtgatatataatgcaatgt |
43117870 |
T |
|
| Q |
420 |
taataccaannnnnnnaccattttcttctaatttctcgtatgggttaacaatgacattttattctcgtagttttgttacatgagattttctctgaagagt |
519 |
Q |
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| T |
43117869 |
taataccaactttttaaccattttcttctaatttctcgtatgggttaacaatgacattttattatcgtagttttgttacatgagattttctctgaagagt |
43117770 |
T |
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| Q |
520 |
gtattttcttc |
530 |
Q |
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||||||||||| |
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| T |
43117769 |
gtattttcttc |
43117759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 6263105 - 6263135
Alignment:
| Q |
67 |
ctcaaatgactattgtcattttatctatcta |
97 |
Q |
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| T |
6263105 |
ctcaaatgactattgtcattttatctatcta |
6263135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 9412399 - 9412358
Alignment:
| Q |
63 |
agttctcaaatgactattgtcattttatctatctattaaaaa |
104 |
Q |
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| T |
9412399 |
agttctcaaatgactattgtcattttatttatttataaaaaa |
9412358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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