View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_31 (Length: 239)
Name: NF6327_low_31
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 16602249 - 16602098
Alignment:
| Q |
72 |
aagacaataacacaaaagaagatattttgagaagagagacaacaattgattacaaatccatcgatatatctcattcaattggcacgaagagataatctca |
171 |
Q |
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| T |
16602249 |
aagacaataacacaaaataagatattttgaaaagagagacaacaattgattacaaattcatcgatat--ctcattcaattggcacgaagagataatctca |
16602152 |
T |
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| Q |
172 |
tgattgaagaagagagagaaatc-accgattaattacaactcttgtatcacgtg |
224 |
Q |
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| T |
16602151 |
tgtttgaagaagagagagaaatcaaccaattaattacaactcttgtatcacgtg |
16602098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16602449 - 16602407
Alignment:
| Q |
1 |
ttttagcaagtatgcaattggatgagaagattttaataaaaat |
43 |
Q |
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| T |
16602449 |
ttttaggaaggatgcaattggatgagaagattttaataaaaat |
16602407 |
T |
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