View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_33 (Length: 237)
Name: NF6327_low_33
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37232800 - 37232580
Alignment:
| Q |
1 |
ctgttgaatttgcgatattagtcagcttggttaatccaaaatctgcaatctgtgataacaagaataatataagatctactacaattatctcaagaaggaa |
100 |
Q |
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| T |
37232800 |
ctgttgaatttgcgatattagtcagcttggttaatccaaaatctgcaatctgtgataacaagaataatatatgatctactacaattatctcaataaggaa |
37232701 |
T |
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| Q |
101 |
aataataaatattaagaagctttaacaaaagaggcatagtattataccttcccattgaagtttttatttaataaaatattatctgattttatgtcacgat |
200 |
Q |
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| T |
37232700 |
aataataaatattaagaagctttaacaaaagaggcatagtattataccttcccattgaagtttttatttaataaaatattatctgattttatgtcacgat |
37232601 |
T |
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| Q |
201 |
ggatatatacaggcaccgaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
37232600 |
ggatatatacaggcaccgaat |
37232580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37385148 - 37385251
Alignment:
| Q |
1 |
ctgttgaatttgcgatattagtcagcttggttaatccaaaatctgcaatctgtgataacaagaataatataagatctactacaattatctcaagaaggaa |
100 |
Q |
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||||||||||||| || ||| ||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||| |||||||||||||||||||| |
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| T |
37385148 |
ctgttgaatttgcagaatcagtaagcctggttaatccaaaatctgcaatctgtaataataagaataatgtatgatctaccacaattatctcaagaaggaa |
37385247 |
T |
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| Q |
101 |
aata |
104 |
Q |
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|||| |
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| T |
37385248 |
aata |
37385251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 37385266 - 37385347
Alignment:
| Q |
140 |
tattataccttcccattgaagtttttatttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaat |
221 |
Q |
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| T |
37385266 |
tattataccttcccagtaaagttttcatttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaat |
37385347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 37218023 - 37217950
Alignment:
| Q |
137 |
tagtattataccttcccattgaagtttttatttaataaaatattatctgattttatgtcacgatggatatatac |
210 |
Q |
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| T |
37218023 |
tagtactataccttgccagtgaagttttcatttaacaaaatattatctgattttatgtcgcgatggatatatac |
37217950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 37223723 - 37223647
Alignment:
| Q |
137 |
tagtattataccttcccattgaagtttttatttaataaaatattatctgattttatgtcacgatggatatatacagg |
213 |
Q |
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||||| ||| |||| ||| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
37223723 |
tagtactatgccttgccagtgaagttttcatttaacagaatattatctgattttatgtcacgatggatatatacagg |
37223647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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