View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_34 (Length: 221)
Name: NF6327_low_34
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 44461266 - 44461459
Alignment:
| Q |
12 |
tgagatgaatcaactttaaaactttccaaactcctttcataagaaagaagctccttgttcaaaattggatcagaacaaagcaaaaaaggaataggatttt |
111 |
Q |
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| T |
44461266 |
tgagaagaatcaactttaaaactttccaaactcctttcataagaaagaagctccttgttcaaaattggatcagaacaaagcaaaaaaggaataggatttt |
44461365 |
T |
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| Q |
112 |
gtccatcttgtgaactcaactccacaagctttcttagaaaattgagagttgcatcaacagacatgcctccaattatgccaacagtagttccttg |
205 |
Q |
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| T |
44461366 |
gtccatcttgtgaactcaactccacaagctttcttagaaaattgagagttgcatcaacagacatgcctccaattatgccaacagtagttccttg |
44461459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 25516833 - 25516711
Alignment:
| Q |
31 |
aactttccaaactcctttcataagaaagaagctccttgttcaaaattggatcagaacaaagcaaaaaaggaataggatttt-gtccatcttgtgaactca |
129 |
Q |
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| T |
25516833 |
aactttgcaaactcctttcataggagagaatctccttattcaacagtggaacagaacaaagagaaaaaggaat-ggattttagtccatctagtgaactca |
25516735 |
T |
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| Q |
130 |
actccacaagctttcttagaaaat |
153 |
Q |
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| T |
25516734 |
actttacaagttttcttagtaaat |
25516711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 25538915 - 25538995
Alignment:
| Q |
77 |
tggatcagaacaaagcaaaa-aaggaataggattttgtccatcttgtgaactcaactccacaagctttcttagaaaattga |
156 |
Q |
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| T |
25538915 |
tggaacagagcaaagcaaaaaaaggaatggaattttgtccatcttgtgaattcaactctataagttttcttataaaattga |
25538995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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