View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_4 (Length: 485)
Name: NF6327_low_4
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Complemental strand, 36354447 - 36353986
Alignment:
| Q |
11 |
cacagacacaaaccgaaactaatgcattctagttgnnnnnnncatccttgattttctcttcttcacacgttttggtcgacctcgac----agcattgtgg |
106 |
Q |
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| T |
36354447 |
cacagacacaaaccgaaactaatgcattctagttgtttttttcatccttgattttctcttcttcacacgttttggtcgacctcgacgtacagcattgtgg |
36354348 |
T |
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| Q |
107 |
catcttcctattggacaaca-tttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagataca |
205 |
Q |
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| T |
36354347 |
catcctcctattggacaacactttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagataca |
36354248 |
T |
|
| Q |
206 |
acaatagctactatttctgggaatatttttctttcccagttcatctttgtttattcatgttcatccttttctttgtgttagcattttcatggtacataaa |
305 |
Q |
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| T |
36354247 |
acaatagctactatttctgggaatatttttctttcccagttcatctttgtttattcatgttcatccttttctttgtgttagcattttcatggtacataaa |
36354148 |
T |
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| Q |
306 |
ctatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattgttgcttgttgttcattgtctctcaagtgga |
405 |
Q |
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| T |
36354147 |
ctatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattgttgcttgttgttcattgtctctcaagtgga |
36354048 |
T |
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| Q |
406 |
gaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctcc |
467 |
Q |
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| T |
36354047 |
gaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctcc |
36353986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 182 - 464
Target Start/End: Complemental strand, 36355557 - 36355275
Alignment:
| Q |
182 |
tttccatatctatggcaagatacaacaatagctactatttctgggaatatttttctttcccagttcatctttgtttattcatgttcatccttttctttgt |
281 |
Q |
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|||||||||||||||| |||||||||||||||||||| | |||||| |||| ||| ||||| ||||||||||||| |||| | ||||||||||| || |
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| T |
36355557 |
tttccatatctatggccagatacaacaatagctactactcttgggaaaatttctctatcccaattcatctttgtttcttcacaattatccttttcttcgt |
36355458 |
T |
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| Q |
282 |
gttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattattgttgctt |
381 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||| || |||| |||||| ||||||||||| |
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| T |
36355457 |
gttagcattttcatggtacataaactatgaatacatgtacgaggacatgtttattcaaatgaagattttgttggcctttgtaccactaatattgttgctt |
36355358 |
T |
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| Q |
382 |
gttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatc |
464 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||||||||||||||| || ||| | ||||||||||||||||| |
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| T |
36355357 |
gttgttcattgtctctcaagtgaaggatcgttccctttacctttgccagaggagagagagtctctacatagagctggtggatc |
36355275 |
T |
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