View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_low_5 (Length: 482)

Name: NF6327_low_5
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_low_5
NF6327_low_5
[»] chr3 (31 HSPs)
chr3 (1-465)||(22615422-22615886)
chr3 (95-284)||(21937173-21937362)
chr3 (108-369)||(22186923-22187184)
chr3 (108-384)||(22027920-22028196)
chr3 (108-384)||(22115005-22115281)
chr3 (119-291)||(22657347-22657519)
chr3 (108-375)||(22052662-22052929)
chr3 (108-384)||(22034437-22034713)
chr3 (95-291)||(30989562-30989758)
chr3 (108-287)||(21945641-21945820)
chr3 (108-330)||(22179391-22179613)
chr3 (147-271)||(22208053-22208177)
chr3 (97-385)||(22104642-22104930)
chr3 (108-271)||(21930454-21930617)
chr3 (109-279)||(22621185-22621355)
chr3 (109-291)||(22648429-22648611)
chr3 (100-181)||(22458751-22458832)
chr3 (100-181)||(22481732-22481813)
chr3 (108-279)||(22436904-22437075)
chr3 (108-279)||(22630709-22630880)
chr3 (109-257)||(18967258-18967404)
chr3 (116-289)||(22468226-22468399)
chr3 (406-465)||(22657652-22657711)
chr3 (140-330)||(22431454-22431643)
chr3 (406-448)||(22621500-22621542)
chr3 (415-465)||(22104550-22104600)
chr3 (415-465)||(22179244-22179294)
chr3 (415-465)||(30989894-30989944)
chr3 (138-252)||(2749082-2749196)
chr3 (415-465)||(18967574-18967624)
chr3 (155-289)||(22368229-22368363)
[»] chr1 (6 HSPs)
chr1 (142-288)||(34975398-34975544)
chr1 (142-287)||(34989234-34989379)
chr1 (129-291)||(34980173-34980337)
chr1 (119-183)||(2305766-2305830)
chr1 (409-457)||(34980004-34980052)
chr1 (409-447)||(34989071-34989109)
[»] chr8 (2 HSPs)
chr8 (144-271)||(27294581-27294708)
chr8 (415-448)||(27294439-27294472)
[»] chr4 (1 HSPs)
chr4 (109-169)||(29610842-29610902)
[»] chr7 (2 HSPs)
chr7 (415-444)||(873151-873180)
chr7 (415-444)||(1234428-1234457)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 22615422 - 22615886
Alignment:
Q  1 cacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccatttctgtagtaatatcccgaggcaaagacttgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22615422 cacaacaacgtacctcttttgctgcaagtagtttcttacctcatcgattaatgaccctctatccatttctgtaggaatatcccgaggcaaagacttgtga 22615521  T
Q  101 aacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615522 aacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctat 22615621  T
Q  201 caaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615622 caaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaa 22615721  T
Q  301 tctttctctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcataccatttagcattttgtattccacttgat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615722 tctttctctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcataccatttagcattttgtattccacttgat 22615821  T
Q  401 tcttgaggttggatttggaagccatatctttcacttctttccttgatcatacaaacagatgactt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22615822 tcttgaggttggatttggaagccatatctttcacttctttccttgatcatacaaacagacgactt 22615886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 95 - 284
Target Start/End: Complemental strand, 21937362 - 21937173
Alignment:
Q  95 ttgtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctcct 194  Q
    |||| ||||||| ||||||||||| ||||||||||||| | |   |||| ||||||||||||||||||||||||||||||||||||||||   || ||||    
T  21937362 ttgtaaaacttgagcaacatgtccttcaacaacccttcaacatcatatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatcct 21937263  T
Q  195 tgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcctttta 284  Q
    |||| |||||| | ||||| || ||||||||||| || |||||||||||||| |||||||| ||||||||||||||| | ||||| ||||    
T  21937262 tgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctctgcccttcccttta 21937173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 108 - 369
Target Start/End: Complemental strand, 22187184 - 22186923
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| ||||||||||||||||||||||||||    |  |||||||| ||||||||    
T  22187184 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaac 22187085  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttct 307  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| | ||||||||||||| | ||||| ||||||| |||  | |||||||||| |    
T  22187084 tttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaatcaatcttttt 22186985  T
Q  308 ctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtc 369  Q
    || | | ||| |||||||||||| |||  |||||| |||| ||||| | ||| |||||||||    
T  22186984 cttggcgcttcaaatcccacaacctcagcttcctcgatgtaaagagcagccactcgagggtc 22186923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 108 - 384
Target Start/End: Complemental strand, 22028196 - 22027920
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| ||||||||||||||||||||||||||    |  |||||||| ||||||||    
T  22028196 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaac 22028097  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttct 307  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| || |||||||||||| | ||||| | |||||||||  |  ||||||||| |    
T  22028096 tttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagtcaatcttttt 22027997  T
Q  308 ctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcataccatttagcatt 384  Q
    || | | ||| |||||||||||| |||  |||||| |||| ||||| | ||| ||||||||| | |||||| |||||    
T  22027996 cttggcgcttcaaatcccacaacctcagcttcctcgatgtaaagagcagccactcgagggtcgttccatttggcatt 22027920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 108 - 384
Target Start/End: Complemental strand, 22115281 - 22115005
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    ||||||| ||||||||||||||||| |     |||||||||||||||||||||||||||||||||||||||||||||   |  |||||||| ||||||||    
T  22115281 gcaacatatccctcaacaacccttcaacttcatatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaac 22115182  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttct 307  Q
     ||||| |  ||||||||||| || |||||||||||||| |||||||| | ||||||||||||| | ||||| | ||||| |||  | |||||||||| |    
T  22115181 tttctttgatagagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgt 22115082  T
Q  308 ctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcataccatttagcatt 384  Q
    || |   ||| |||||||||||| |||  |||||| | || ||||| | ||| ||||||||| | |||||| |||||    
T  22115081 cttggtgcttcaaatcccacaacctcagcttcctcaacgtaaagagcagccactcgagggtcgtgccatttggcatt 22115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 119 - 291
Target Start/End: Original strand, 22657347 - 22657519
Alignment:
Q  119 ctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaa 218  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||  |||||| ||||| |||||||| || || ||||    
T  22657347 ctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaa 22657446  T
Q  219 gagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 291  Q
    |||| ||||| || ||||||||||||||||| ||||| |  ||||||||||||  |||||| |||||||||||    
T  22657447 gagtagtttttccttgccctcccattcccacgacagatatgacagtgcgctctgatcttccctttaccaacca 22657519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 375
Target Start/End: Complemental strand, 22052929 - 22052662
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    ||||||| ||||||||||||||||| | |   ||||||||||||||||| |||||||| ||||||||||| ||||||   |  |||||||| ||||||||    
T  22052929 gcaacatttccctcaacaacccttcaacatcatatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaac 22052830  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttct 307  Q
     |||||||| ||||| ||||| || |||||||||||||| |||| ||| || |||||||||||| | ||||| ||||||| |||  | |||||||||| |    
T  22052829 tttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatcttttt 22052730  T
Q  308 ctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcatacca 375  Q
    || |   ||| |||||||||||| |||  |||||  | || ||||| | ||| |||||||||||||||    
T  22052729 cttggtacttcaaatcccacaacctcagcttccttgacgtaaagagcagccactcgagggtcatacca 22052662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 108 - 384
Target Start/End: Complemental strand, 22034713 - 22034437
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| |||||||||||| |||||||||||||    |  |||||||| ||||||||    
T  22034713 gcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaac 22034614  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttct 307  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| || |||||||||||| | ||||| | ||||| |||  | |||||||||| |    
T  22034613 tttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgt 22034514  T
Q  308 ctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcataccatttagcatt 384  Q
    || |   ||| |||||||||||| ||| ||||||| | || ||||| | | | ||||||||| | |||||| |||||    
T  22034513 cttggtgcttcaaatcccacaacctcagtttcctcaacgtaaagagcagcgactcgagggtcgtgccatttggcatt 22034437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 291
Target Start/End: Original strand, 30989562 - 30989758
Alignment:
Q  95 ttgtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctcct 194  Q
    |||| ||||||  ||||||||||||||||||||||||| | | | ||||||||||||||| |||||||||||||||||||||||||||||   || | |     
T  30989562 ttgtaaaactttagcaacatgtccctcaacaacccttcaacagtatatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcc 30989661  T
Q  195 tgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 291  Q
    || | |||||||| ||||| | ||||||||||||||| ||||||||||| || || ||||| |  || ||||||||  ||||||| |||||||||||    
T  30989662 tgttgtcaaaaactttcttcgtaagagtggttttaccttgccctcccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaacca 30989758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 21945820 - 21945641
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    ||||||||||||||||||| ||||| | |   |||||||||||||| |||||||||||| ||||||||||||||| |   || |||||||| ||||||||    
T  21945820 gcaacatgtccctcaacaatccttcaacatcatatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaac 21945721  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttacca 287  Q
     |||||||| ||||||||||| || |||||||||||||| ||||| || || |||||||||||  | ||||| |||||||    
T  21945720 tttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctcctcccttccctttacca 21945641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 108 - 330
Target Start/End: Complemental strand, 22179613 - 22179391
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    |||||||||| |||||||| |||||   | | ||||||||||||||||| |||||||||||||||||||||||||||   |  |||||||| ||||||||    
T  22179613 gcaacatgtctctcaacaatccttcagcattatatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaac 22179514  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttct 307  Q
     |||||||| ||||| ||||| || ||||||||||||||||||||  | || ||||||||||||   ||||| | ||||| |||  | |||||||||| |    
T  22179513 tttcttggctagagttgtttttccttgccctcccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaatcaatcttttt 22179414  T
Q  308 ctagactcttgaaatcccacaac 330  Q
    || | | ||| ||||||||||||    
T  22179413 cttggcgcttcaaatcccacaac 22179391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 22208177 - 22208053
Alignment:
Q  147 gagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcc 246  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||| ||||| |||||||| | |||||||||||| |||||||| ||||||||||| ||    
T  22208177 gagacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatccc 22208078  T
Q  247 caccacagagacaacagtgcgctct 271  Q
     ||||| |||||||||||| |||||    
T  22208077 aaccaccgagacaacagtgagctct 22208053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 97 - 385
Target Start/End: Complemental strand, 22104930 - 22104642
Alignment:
Q  97 gtgaaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttg 196  Q
    ||||| ||| ||||||||||||||||| | |||||| | | | || || || |||||||||||||| ||| |||||||||||||||||   || ||||||    
T  22104930 gtgaagctttcgcaacatgtccctcaaaatcccttcaacattataggactgcgacactgtgatccaaacatgacaatcaaagtgtccaattacatccttg 22104831  T
Q  197 ctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccga 296  Q
    || ||||||||  ||||||| ||||| ||||| || |||||||||||||| ||||| || || |||||||||||| |  |||| ||||||| |||  | |    
T  22104830 ctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaa 22104731  T
Q  297 tcaatctttctctagactcttgaaatcccacaacgtcaatttcctccatgtgaagagtatccaatcgagggtcataccatttagcattt 385  Q
    ||||||||| ||| |   |||  ||||||||||| |||  |||||| |||| ||||| | | | ||||||||| | |||||| ||||||    
T  22104730 tcaatctttttcttggtgctttgaatcccacaacatcagcttcctcaatgtaaagagcagcaactcgagggtcgtgccatttggcattt 22104642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 21930617 - 21930454
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    ||||||||||||||||||||||||| | |   |||||||||||||||||||||||||| ||  ||| ||| ||||||   |  |||||||| ||||||||    
T  21930617 gcaacatgtccctcaacaacccttcaacatcatatgattgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaac 21930518  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctct 271  Q
     |||||||| ||||| ||||| || |||||||||||||| |||||||| || ||||||||||||    
T  21930517 tttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctct 21930454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 279
Target Start/End: Original strand, 22621185 - 22621355
Alignment:
Q  109 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 208  Q
    ||||||||  |||| |||||| ||||||  ||||||||| |||||||||| |||||||||| | || ||||||||    ||||| ||||| || |||||     
T  22621185 caacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacc 22621284  T
Q  209 ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 279  Q
    || ||||||||||||| ||| || || ||||||||||| ||||||||||  ||||| |||||| |||||||    
T  22621285 tttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgctcttctcttcc 22621355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 291
Target Start/End: Original strand, 22648429 - 22648611
Alignment:
Q  109 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 208  Q
    ||||||| | |||| |||||||||| ||  |||||||||  ||||| |||||||||||||| | |||||||||||    ||||| ||||| ||||| ||     
T  22648429 caacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgctacctctttgctgtcaaacact 22648528  T
Q  209 ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaacca 291  Q
    ||  |||||||||||||||| ||  |||||||||| || ||||||||||  ||||||||||||  |||||| | |||||||||    
T  22648529 tttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctaccaacca 22648611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 22458751 - 22458832
Alignment:
Q  100 aaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgt 181  Q
    ||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  22458751 aaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 22458832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 22481732 - 22481813
Alignment:
Q  100 aaacttgcgcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgt 181  Q
    ||||||| ||| ||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  22481732 aaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgt 22481813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 279
Target Start/End: Original strand, 22436904 - 22437075
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    |||| ||||||||||||||   |||| |||||||||||||||||||||||||||||||| |||| ||||| |||    | || |   || | ||||||||    
T  22436904 gcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaac 22437003  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 279  Q
     |||||||| ||||| ||||| || |||||||||||||| || | ||||||||| |  ||||||||||||||    
T  22437004 tttcttggccagagtagtttttccttgccctcccattcctacaatagagacaactgcacgctctactcttcc 22437075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 108 - 279
Target Start/End: Original strand, 22630709 - 22630880
Alignment:
Q  108 gcaacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaac 207  Q
    |||| ||||||||||||||   ||||||| |||||| | ||||||| ||||||||| || ||||||||||||||  |   ||||    | | |||||||     
T  22630709 gcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttcggttgtcaaaaat 22630808  T
Q  208 attcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 279  Q
     |||||||||||||||||||| ||| | ||||||||||| || | ||||||||| ||||| ||| |||||||    
T  22630809 tttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttcc 22630880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 18967258 - 18967404
Alignment:
Q  109 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca 208  Q
    ||||||||| || ||||||||||||| |   ||||||||||||||||  ||||||| | |||||| ||||||||||   || |||||| | ||| ||||     
T  18967258 caacatgtcgcttaacaacccttctacatcatatgattgagacactg--atccatataagacaattaaagtgtccaatgacatccttgttgtcagaaact 18967355  T
Q  209 ttcttggcaagagtggttttaccctgccctcccattcccaccacagaga 257  Q
     |||| || ||||| ||||| || |||||||||||||| ||||||||||    
T  18967356 ctctttgctagagttgtttttccttgccctcccattcctaccacagaga 18967404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 289
Target Start/End: Original strand, 22468226 - 22468399
Alignment:
Q  116 tccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttgg 215  Q
    |||||||||||   ||||||| |||||| | ||||||| |||||||||||| |||||||||| |||  |   ||||  | | | |||||||| |||||||    
T  22468226 tccctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttgg 22468325  T
Q  216 caagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttccttttaccaac 289  Q
    | | ||||||||| ||| | ||||||||||| || |  |||||||| ||||||||| ||||||| | |||||||    
T  22468326 ctatagtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctctaccaac 22468399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 465
Target Start/End: Original strand, 22657652 - 22657711
Alignment:
Q  406 aggttggatttggaagccatatctttcacttctttccttgatcatacaaacagatgactt 465  Q
    ||||||||||||||| |||||||||||||||||||| ||||||  ||||||| |||||||    
T  22657652 aggttggatttggaaaccatatctttcacttctttctttgatcccacaaacaaatgactt 22657711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 330
Target Start/End: Original strand, 22431454 - 22431643
Alignment:
Q  140 tatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctc 239  Q
    |||| |||||||||||||||||||| ||||||||||||||||  |   |||   ||| | |||||||| |||||||  ||||||||||| ||| | ||||    
T  22431454 tatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactttcttggttagagtggtttttcccagtcctc 22431553  T
Q  240 ccattcccaccacagagacaacagtgcgctctactcttccttttaccaaccagccgatcaatctttctctagactcttgaaatcccacaac 330  Q
    ||||| |||| |  ||||| || ||| ||||| || |||| ||||||| |||  | |||||| | ||||| | ||||| ||||||||||||    
T  22431554 ccatt-ccacaatggagaccactgtgagctcttcttttccatttaccagccaatcaatcaatatgtctcttggctcttcaaatcccacaac 22431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 22621500 - 22621542
Alignment:
Q  406 aggttggatttggaagccatatctttcacttctttccttgatc 448  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22621500 aggttggatttggaagccatacctttcacttctttccttgatc 22621542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 22104600 - 22104550
Alignment:
Q  415 ttggaagccatatctttcacttctttccttgatcatacaaacagatgactt 465  Q
    |||||||||||||| |||||||||||||||||||  || ||||||||||||    
T  22104600 ttggaagccatatcgttcacttctttccttgatcccacgaacagatgactt 22104550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 22179294 - 22179244
Alignment:
Q  415 ttggaagccatatctttcacttctttccttgatcatacaaacagatgactt 465  Q
    ||||||||||||| | |||||||||||||||||| ||| ||||||||||||    
T  22179294 ttggaagccatatttatcacttctttccttgatcctacgaacagatgactt 22179244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 30989894 - 30989944
Alignment:
Q  415 ttggaagccatatctttcacttctttccttgatcatacaaacagatgactt 465  Q
    ||||||||||||||||||||||||||||||||||  || |||||| |||||    
T  30989894 ttggaagccatatctttcacttctttccttgatctcacgaacagacgactt 30989944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 2749196 - 2749082
Alignment:
Q  138 tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccc 237  Q
    |||| |||||||| |||||||  ||  ||||||||||||||||| |  | ||||  ||||| ||||||||   |||||||||||||||||| ||  | ||    
T  2749196 tgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcc 2749097  T
Q  238 tcccattcccaccac 252  Q
    ||||||||| |||||    
T  2749096 tcccattcctaccac 2749082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 18967574 - 18967624
Alignment:
Q  415 ttggaagccatatctttcacttctttccttgatcatacaaacagatgactt 465  Q
    ||||||||||||| | ||||||||||||||||||  ||||||| |||||||    
T  18967574 ttggaagccatatttgtcacttctttccttgatccgacaaacatatgactt 18967624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 289
Target Start/End: Original strand, 22368229 - 22368363
Alignment:
Q  155 gtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacag 254  Q
    |||||||||| ||||||||||||||||  |   ||||  | | | |||||||| |||||||| ||||||||||| ||| | ||||||||||| || |  |    
T  22368229 gtgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattccaacaatgg 22368328  T
Q  255 agacaacagtgcgctctactcttccttttaccaac 289  Q
    ||||||| ||||| | | ||||||| | |||||||    
T  22368329 agacaactgtgcggtgtgctcttccctctaccaac 22368363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 34975544 - 34975398
Alignment:
Q  142 tgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctccc 241  Q
    |||||| ||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||| || || |||||||||||||| || |||||||||    
T  34975544 tgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctccc 34975445  T
Q  242 attcccaccacagagacaacagtgcgctctactcttccttttaccaa 288  Q
    || || || |||||||  |||||||||||||||||||| ||||||||    
T  34975444 atcccaactacagagatgacagtgcgctctactcttccctttaccaa 34975398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 34989379 - 34989234
Alignment:
Q  142 tgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctccc 241  Q
    |||||| ||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||| || || |||||||||||||| || |||||||||    
T  34989379 tgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctccc 34989280  T
Q  242 attcccaccacagagacaacagtgcgctctactcttccttttacca 287  Q
    || || || |||||||  |||||||||||||||||||| |||||||    
T  34989279 atcccaactacagagatgacagtgcgctctactcttccctttacca 34989234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 129 - 291
Target Start/End: Complemental strand, 34980337 - 34980173
Alignment:
Q  129 cttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggtttt 228  Q
    |||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||   |||||| |||||||||||||| || || ||||||||  ||||    
T  34980337 cttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttt 34980238  T
Q  229 accctgccctcccattcccaccacagaga--caacagtgcgctctactcttccttttaccaacca 291  Q
     || |||||||||||||| || |||||||    |||||||||||||||||||| |||||||||||    
T  34980237 tccttgccctcccattccaactacagagatgacacagtgcgctctactcttccctttaccaacca 34980173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 2305766 - 2305830
Alignment:
Q  119 ctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtcc 183  Q
    ||||||||  |||||||| |||||||||| |||| |||||||||||||||||| |||||||||||    
T  2305766 ctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtgtcc 2305830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 34980052 - 34980004
Alignment:
Q  409 ttggatttggaagccatatctttcacttctttccttgatcatacaaaca 457  Q
    |||||||||||| |||||||||||||||||||| ||||||  |||||||    
T  34980052 ttggatttggaaaccatatctttcacttctttctttgatcccacaaaca 34980004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 34989109 - 34989071
Alignment:
Q  409 ttggatttggaagccatatctttcacttctttccttgat 447  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  34989109 ttggatttggaaaccatatctttcacttctttctttgat 34989071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 27294708 - 27294581
Alignment:
Q  144 attgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccctcccat 243  Q
    |||||||||||||||||||||||||| | |||| ||||||    || |||||||| |||||||| |||||| | ||||||||||| || || ||||||||    
T  27294708 attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccat 27294609  T
Q  244 tcccaccacagagacaacagtgcgctct 271  Q
    ||| |||||||| || ||||||| ||||    
T  27294608 tcctaccacagaaactacagtgccctct 27294581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 27294472 - 27294439
Alignment:
Q  415 ttggaagccatatctttcacttctttccttgatc 448  Q
    ||||||||||||||||||||||||||||||||||    
T  27294472 ttggaagccatatctttcacttctttccttgatc 27294439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 29610842 - 29610902
Alignment:
Q  109 caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacga 169  Q
    ||||||| |||| | ||| ||||||||| |||||||||| || ||||||||||||||||||    
T  29610842 caacatgccccttagcaatccttctatattgtatgattgtgatactgtgatccatacacga 29610902  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 444
Target Start/End: Original strand, 873151 - 873180
Alignment:
Q  415 ttggaagccatatctttcacttctttcctt 444  Q
    ||||||||||||||||||||||||||||||    
T  873151 ttggaagccatatctttcacttctttcctt 873180  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 444
Target Start/End: Original strand, 1234428 - 1234457
Alignment:
Q  415 ttggaagccatatctttcacttctttcctt 444  Q
    ||||||||||||||||||||||||||||||    
T  1234428 ttggaagccatatctttcacttctttcctt 1234457  T

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