View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_6 (Length: 482)
Name: NF6327_low_6
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_6 |
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| [»] scaffold0405 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 203 - 381
Target Start/End: Original strand, 9694951 - 9695129
Alignment:
| Q |
203 |
taggttgaagcgcaagggcgcaggtactggaaccaagcagtcgaagaaagctaaggatcctaacaagcctaagaggcctccaagtgctttcttcgttttc |
302 |
Q |
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| T |
9694951 |
taggttgaagcgcaagggcgcaggtactggaaccaagcagtcgaagaaagctaaggatcctaacaagcctaagaggcctccaagtgctttcttcgttttc |
9695050 |
T |
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| Q |
303 |
atgtaagattcggtgctaaaaattgttggaatcggtgcttattgttcacgaatttgttccgttgaagtttgatttaatt |
381 |
Q |
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| T |
9695051 |
atgtaagattcggtgctaaaaattgttggaatcggtgcttattgttcacgaatttgttccgttgaagtttgatttaatt |
9695129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 9694791 - 9694883
Alignment:
| Q |
43 |
gaagttcaatcaccgtttcaccatgccgaaagctgtttccgatgccaaacctgctgataaccggtgagattcttcttccgacttcgagatttg |
135 |
Q |
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| T |
9694791 |
gaagttcaatcaccgtttcaccatgccgaaagctgtttccgacgccaaacctgctgataaccggtgagattcttcttccgacttcgagatttg |
9694883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 417 - 482
Target Start/End: Original strand, 9695168 - 9695233
Alignment:
| Q |
417 |
ctgcgtttcggtgaagttcaaaacgttacgaacgtgttccgttgaagttcgatttgattctgatga |
482 |
Q |
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| T |
9695168 |
ctgcgtttcggtgaagttcaaaacgttacgaacgtgttccgttgaagttcgatttgattctgatga |
9695233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 209 - 389
Target Start/End: Complemental strand, 15560 - 15380
Alignment:
| Q |
209 |
gaagcgcaagggcgcaggtactggaaccaagcagtcgaagaaagctaaggatcctaacaagcctaagaggcctccaagtgctttcttcgttttcatgtaa |
308 |
Q |
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| T |
15560 |
gaagcgcaagggcgctggtacttgaactaagcaatcgaagaaagctaacgatcctaacaagcctaagaggtctccaagtgctttcttcgttttcatgtaa |
15461 |
T |
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| Q |
309 |
gattcggtgctaaaaattgttggaatcggtgcttattgttcacgaatttgttccgttgaagtttgatttaattcttacgag |
389 |
Q |
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| T |
15460 |
gattcggtgctaaaaattgttcgtattggtgctaaatgttcacgaatttgttcggttgaagttcgatttaattctgacgag |
15380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 15630 - 15561
Alignment:
| Q |
43 |
gaagttcaatcacc---gtttcaccatgccgaaagctgtttc-cgatgccaaacctgctgataaccggtg |
108 |
Q |
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| T |
15630 |
gaagttcaatcaccagcgtttcaccatgccgaaagctgtttctcgatgccaaacctgctgataactggtg |
15561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 31115674 - 31115622
Alignment:
| Q |
255 |
aaggatcctaacaagcctaagaggcctccaagtgctttcttcgttttcatgta |
307 |
Q |
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| T |
31115674 |
aaggatcctaacaagccaaagaggcctccaagtgctttcttcgttttcatgta |
31115622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 54097239 - 54097292
Alignment:
| Q |
255 |
aaggatcctaacaagcctaagaggcctccaagtgctttcttcgttttcatgtaa |
308 |
Q |
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| T |
54097239 |
aaggaccctaacaagcctaagagacctccaagtgctttcttcgttttcatgtaa |
54097292 |
T |
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