View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6327_low_7 (Length: 465)

Name: NF6327_low_7
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6327_low_7
NF6327_low_7
[»] chr4 (2 HSPs)
chr4 (37-295)||(31178349-31178606)
chr4 (401-443)||(31178711-31178753)
[»] chr2 (1 HSPs)
chr2 (402-444)||(37468157-37468199)
[»] chr8 (1 HSPs)
chr8 (402-443)||(39199889-39199930)
[»] chr7 (1 HSPs)
chr7 (226-258)||(41750114-41750146)
[»] chr5 (2 HSPs)
chr5 (226-274)||(24468310-24468358)
chr5 (226-274)||(38426384-38426432)
[»] chr3 (1 HSPs)
chr3 (402-430)||(43898585-43898613)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 31178349 - 31178606
Alignment:
Q  37 agtagctttgatttgttcaagtgttaaatgtgtattgtgtcacacacactcaaagataattgggtttgcaacaaaagtggtaccttcggtgatttatata 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31178349 agtagctttgatttgttcaagtgttaaatgtgtattgtgtcacacacactcaaagataattgggtttgcaacaaaagtggtaccttcggtgatttatata 31178448  T
Q  137 tagtggtgaacaaggaatcttcaatagtggatcaaaatagtaattcaccaccacgattggaatagaaatgttttgtacacattcaggttagagaaatgat 236  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  31178449 tagttgtgaacaaggaatcttcaatagtggatcaaaatagtaa-tcaccaccacgattggaatagaaatgttttgtgcacattcagtttagagaaatgat 31178547  T
Q  237 atttaaacgaccatttttaaacgatttttgcgataactctttttgatatttgtattgta 295  Q
    |||||||| | |||||||||| |||||||| |||||||||||||||||||| |||||||    
T  31178548 atttaaacaatcatttttaaatgatttttgtgataactctttttgatatttttattgta 31178606  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 31178711 - 31178753
Alignment:
Q  401 tgttgtcacaaaagttgtttaaaattggtttgacaaatatcat 443  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  31178711 tgttgtcacaaaagttgtttaaaatcggttggacaaatatcat 31178753  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 444
Target Start/End: Complemental strand, 37468199 - 37468157
Alignment:
Q  402 gttgtcacaaaagttgtttaaaattggtttgacaaatatcatg 444  Q
    ||||||||||||||||||| |||||||||  ||||||||||||    
T  37468199 gttgtcacaaaagttgtttcaaattggttgtacaaatatcatg 37468157  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 39199930 - 39199889
Alignment:
Q  402 gttgtcacaaaagttgtttaaaattggtttgacaaatatcat 443  Q
    ||||||||||||||||||||| |||||||  |||||||||||    
T  39199930 gttgtcacaaaagttgtttaagattggttgtacaaatatcat 39199889  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 41750114 - 41750146
Alignment:
Q  226 agagaaatgatatttaaacgaccatttttaaac 258  Q
    ||||||||||||||||||| |||||||||||||    
T  41750114 agagaaatgatatttaaacaaccatttttaaac 41750146  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 24468358 - 24468310
Alignment:
Q  226 agagaaatgatatttaaacgaccatttttaaacgatttttgcgataact 274  Q
    ||||||||||||||| ||| ||||||||||||| | ||||| |||||||    
T  24468358 agagaaatgatatttgaacaaccatttttaaacaacttttgtgataact 24468310  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 38426432 - 38426384
Alignment:
Q  226 agagaaatgatatttaaacgaccatttttaaacgatttttgcgataact 274  Q
    ||||||||||||||| ||| |  ||||||||||||||||||||| ||||    
T  38426432 agagaaatgatatttgaacaattatttttaaacgatttttgcgacaact 38426384  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 43898613 - 43898585
Alignment:
Q  402 gttgtcacaaaagttgtttaaaattggtt 430  Q
    |||||||||||||||||||||||||||||    
T  43898613 gttgtcacaaaagttgtttaaaattggtt 43898585  T

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