View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6327_low_9 (Length: 396)
Name: NF6327_low_9
Description: NF6327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6327_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 55 - 393
Target Start/End: Complemental strand, 48533500 - 48533130
Alignment:
| Q |
55 |
accttcattattctgatcgcaatgtgacaattgcggtatcttctttagcaatttgctt---------------------ctttagcctcgcaagagacct |
133 |
Q |
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| T |
48533500 |
acctacattattctgatcgcaatgtgacaattgcggtatattctttagcaatttgcttctttgcaagtggcgccttcttctttagcctcgcaagagacct |
48533401 |
T |
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| Q |
134 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
233 |
Q |
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| T |
48533400 |
ctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgtggta |
48533301 |
T |
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| Q |
234 |
tcttacatcatcaactccgcagca----ccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatg-ttttg |
328 |
Q |
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| T |
48533300 |
tctta---catcaactccgcagcaccagccagcctagcctagttctgttgttgttctttaggctgtttctaaaagcattctagtatagtatatgtttttg |
48533204 |
T |
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| Q |
329 |
ttattgttggtttagttcatgg---------aacaaacttaattcatttctatttgatatttttctcaattcat |
393 |
Q |
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| T |
48533203 |
ttattgttggtttggttcatggaacaaacaaaacaaacttaattcatttctatttgatatttttctcaattcat |
48533130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 48536336 - 48536225
Alignment:
| Q |
130 |
acctctctcacaaagatcagatcaacactcataccttccgcatccgcaagttattggggtctcttacatctctatgtggcttatgcttattattcattgt |
229 |
Q |
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| T |
48536336 |
acctctctcacatagatcagatcaacactcgtagattccgggtcctcaggctattggg-tatcttacatctctatgtggcttatgtttattattcactgt |
48536238 |
T |
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| Q |
230 |
ggtatcttacatc |
242 |
Q |
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|||| |||||||| |
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| T |
48536237 |
ggtaacttacatc |
48536225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 48536193 - 48536082
Alignment:
| Q |
253 |
cagcaccagcctagcctagttctgttgtt-----gttcttt-----aggctgtttctaaaagcattctagtatagtatatgttttgttattgttggttta |
342 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| || |
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| T |
48536193 |
cagcaccagcctagcctagttctgttgttacgttgttctttggtttaggctgtttataaaagcattccagtatag--tatgtcttgttattgttgg-ttg |
48536097 |
T |
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| Q |
343 |
gttcatggaacaaac |
357 |
Q |
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| T |
48536096 |
gttcatggaacaaac |
48536082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 48533566 - 48533527
Alignment:
| Q |
18 |
cttacgtcgattactactttgttgcggttattacggcacc |
57 |
Q |
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| T |
48533566 |
cttacgtcgattactactttgttgcggttattatggcacc |
48533527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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