View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_high_16 (Length: 370)
Name: NF6328_high_16
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 4554262 - 4554597
Alignment:
| Q |
20 |
catgggatccaaagtaatattcatgctcttggtgctttgcattacagtttatggtactaacaatgatgactcgttctcaagacagaaggttttggaagtt |
119 |
Q |
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| T |
4554262 |
catgggatccaaagtaatattcatgctcttggtgctttgcattacagtttatggtactaacaatgatgactcgttctcaagacagaaggttttggaagtt |
4554361 |
T |
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| Q |
120 |
gagaaaaaattacaccatcttagaaaacactcgttaaaaaccattaaggtaaaaagttttctttggtatactagacaatatcttacactgttgaatgttg |
219 |
Q |
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| T |
4554362 |
gagaaaaaattacagcatcttagaaaacactcattaaaaaccattaaggtaaaaagttttctttggtatactagacaatatcttacactgttgaatgttg |
4554461 |
T |
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| Q |
220 |
tgtgagatttgatattgtttacattttctaaattgtcacacaaggtgctaagcttaattataannnnnnncatgcttgtagagtgaagatggagatatta |
319 |
Q |
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| T |
4554462 |
tgttagatttgatattgtttagattttctaaattgtcacacaaggtgctaagcttaattataatttttttcatgcttgtagagtgaagatggagatatta |
4554561 |
T |
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| Q |
320 |
tagattgcattgacattaaaaagcagcctgcctttg |
355 |
Q |
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| T |
4554562 |
tagattgcattgacattaaaaaacagcctgcctttg |
4554597 |
T |
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