View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_high_21 (Length: 336)
Name: NF6328_high_21
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 3709530 - 3709256
Alignment:
| Q |
16 |
cacagaactcaaaacctagaagcactttacagatcaatgtattgtacaaccacaatccgtccggccaccggaagtgattttcctgccactgagattaaga |
115 |
Q |
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| T |
3709530 |
cacagaactcaaaacctagaagcactttacagatcaatgta-----caaccacaatccgtccggccactggaagtgattttcctgccactgagattaaga |
3709436 |
T |
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| Q |
116 |
aaaacttgtgttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccagtcacaaatcacaataagcag |
215 |
Q |
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| T |
3709435 |
aaaacttgtgttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccggtcacaaatcacaataagcag |
3709336 |
T |
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| Q |
216 |
taactcaagcactgatacaaattaacctcaactattgctaatcaaatgttagtcacaacatacaagaaaacatattaaaa |
295 |
Q |
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| T |
3709335 |
taactcaagcactgatacaaattaacctcaactattggtaatcaaatgttagtcacaacatacaagaaaacatattaaaa |
3709256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 100 - 295
Target Start/End: Complemental strand, 3718590 - 3718394
Alignment:
| Q |
100 |
gccactgagattaagaaaaacttgtgttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccagtcac |
199 |
Q |
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| T |
3718590 |
gccactggaattaagaaaaatttatgttaattaatatgataaaaatactcacatgatgatgcagaatagcatcaattatttttaagcaaatcccagtcac |
3718491 |
T |
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| Q |
200 |
aaatcacaataagcagtaactcaagcactgatacaaattaacctcaactattgctaatc-aaatgttagtcacaacatacaagaaaacatattaaaa |
295 |
Q |
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| T |
3718490 |
aaatcacaataagcagtaactcaagcactgatataaattaacctcaaccattgctaatcaaaatgttagtcacaacatacaggataacatattaaaa |
3718394 |
T |
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