View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_high_23 (Length: 327)
Name: NF6328_high_23
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 49710829 - 49711126
Alignment:
| Q |
12 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49710829 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
49710928 |
T |
|
| Q |
112 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49710929 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
49711028 |
T |
|
| Q |
212 |
atttacaagagtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt |
309 |
Q |
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| T |
49711029 |
atttacaagcgtcttgaattgaatcaggatcttggactcaagagtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt |
49711126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 49683219 - 49683516
Alignment:
| Q |
12 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||| |
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| T |
49683219 |
aagaaagcattgtatcaatatttggtgcaagggggacaccaggatatattgctccagagctgttctctagacattttggtggggtgtcacacaaatcaga |
49683318 |
T |
|
| Q |
112 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
211 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
49683319 |
tgtctacagttatggaatgatggttttagaaatggttggtcgaagaaagaacatcaaagttgaagtggattgttctagcgagttatattttccacattgg |
49683418 |
T |
|
| Q |
212 |
atttacaagagtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt |
309 |
Q |
| |
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|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||| || |||||||||| |
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| T |
49683419 |
atctacaagcgtcttgaattgaatcaagatcttggactcaagtgtattaaaaatgaaattgatgaagagatggtaagaaagatgacaatggtgagttt |
49683516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 49714470 - 49714766
Alignment:
| Q |
12 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
111 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |
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| T |
49714470 |
aagaaagcattgtatccatatttgttgcg-ggggaacaccaggatatattgctccagagttgttctccagaaattttgacggggtgtcacataaatcaga |
49714568 |
T |
|
| Q |
112 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
211 |
Q |
| |
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||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49714569 |
tgtttatagttatggaatgatggttttagaaatggttggccgaagaaagaacattaaggttgaagttgattgttccagcgagttatattttccacactgg |
49714668 |
T |
|
| Q |
212 |
atttacaagagtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt |
309 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |
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| T |
49714669 |
atttacaagcgtcttgaattgaatcaggatcttgaactgaggtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacagtggtgagttt |
49714766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 49688125 - 49688415
Alignment:
| Q |
12 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
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|
| T |
49688125 |
aagaaagcattgtatccatatttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccgaaattttggtggggtgtcccataaatcaga |
49688222 |
T |
|
| Q |
112 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
211 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||||||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||| |
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| T |
49688223 |
tgtctacagttatggaatgatggt-----aaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattgg |
49688317 |
T |
|
| Q |
212 |
atttacaagagtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt |
309 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
49688318 |
atttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagttt |
49688415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 49215491 - 49215781
Alignment:
| Q |
12 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
111 |
Q |
| |
|
||||||| |||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
49215491 |
aagaaagtattgcatccgtatttggcgcaagaggaacgccaggatatattgctccagagttgttctccagacattttggtggggtgtcacataaatcaga |
49215590 |
T |
|
| Q |
112 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
211 |
Q |
| |
|
||| || ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
49215591 |
tgtttatagttatggaatgatggttttagaaatggtttgtcgaagaaagaacattaaggttgaagttgattg-------gagtaatattttccacactgg |
49215683 |
T |
|
| Q |
212 |
atttacaagagtcttgaattgaatcaggatcttggactcaagtgtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
49215684 |
atttacaagcgtcttgaattgaatcaggatcttggactcaggtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacagtggtgagttt |
49215781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 49725245 - 49725479
Alignment:
| Q |
12 |
aagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcaga |
111 |
Q |
| |
|
||||||| || ||||||||||||||||| || ||||| |||| |||||||| || ||| | || ||||| |||||||||| ||||||||||||||||| |
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| T |
49725245 |
aagaaagtatggtatcaatatttggtgcgagaggaacggcaggctatattgcccccgaggtattttctaggaattttggtgcagtgtcacataagtcaga |
49725344 |
T |
|
| Q |
112 |
tgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactgg |
211 |
Q |
| |
|
||| |||||||| ||||||||||| | || |||||||| | ||||| ||||| || |||||| || | || || || |||||||||| || ||| |
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|
| T |
49725345 |
tgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacatcaacactgaagtggaccgctcgagtgaaatatattttcctcattgg |
49725444 |
T |
|
| Q |
212 |
atttacaagagtcttgaattgaatcaggatcttgg |
246 |
Q |
| |
|
|||||||| ||||||| | |||||||||||||| |
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|
| T |
49725445 |
atttacaaccgtcttgattcaaatcaggatcttgg |
49725479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 49728706 - 49728795
Alignment:
| Q |
51 |
caggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcagatgtctacagttacggaatgatggttttag |
140 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| || || || || || ||||| || ||||| |||||||||||||||| |
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|
| T |
49728706 |
caggatacattgctccagaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatggttttag |
49728795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 44035825 - 44035878
Alignment:
| Q |
98 |
tcacataagtcagatgtctacagttacggaatgatggttttagagatggttggt |
151 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| | |||| ||||||||| |
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|
| T |
44035825 |
tcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggt |
44035878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 30955409 - 30955461
Alignment:
| Q |
98 |
tcacataagtcagatgtctacagttacggaatgatggttttagagatggttgg |
150 |
Q |
| |
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||||| ||||| ||||| || ||||| ||||||||| |||||||||||||||| |
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|
| T |
30955409 |
tcacacaagtctgatgtttatagttatggaatgatgcttttagagatggttgg |
30955461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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