View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6328_high_25 (Length: 281)

Name: NF6328_high_25
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6328_high_25
NF6328_high_25
[»] chr3 (3 HSPs)
chr3 (18-271)||(25901376-25901629)
chr3 (18-271)||(25915394-25915647)
chr3 (143-273)||(36339960-36340090)
[»] chr4 (10 HSPs)
chr4 (18-256)||(10571388-10571626)
chr4 (18-259)||(10553655-10553896)
chr4 (19-264)||(10460343-10460591)
chr4 (153-218)||(10482036-10482101)
chr4 (151-264)||(8443558-8443671)
chr4 (141-230)||(8447792-8447881)
chr4 (153-218)||(10467898-10467963)
chr4 (138-210)||(6392661-6392732)
chr4 (143-219)||(10493520-10493596)
chr4 (139-184)||(1110987-1111032)
[»] chr7 (3 HSPs)
chr7 (143-242)||(26256620-26256719)
chr7 (143-230)||(26237459-26237546)
chr7 (194-271)||(19597752-19597828)
[»] chr1 (2 HSPs)
chr1 (157-245)||(50645608-50645696)
chr1 (138-231)||(4366632-4366725)
[»] chr5 (1 HSPs)
chr5 (159-230)||(23086643-23086714)
[»] chr6 (1 HSPs)
chr6 (143-193)||(19746869-19746919)
[»] chr2 (2 HSPs)
chr2 (145-195)||(25376921-25376971)
chr2 (54-102)||(25376860-25376908)
[»] chr8 (1 HSPs)
chr8 (54-87)||(42846838-42846871)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 25901629 - 25901376
Alignment:
Q  18 cttccactttattggtttgatcatgataagaaccaaggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901629 cttccactttattggtttgatcatgataagaaccaaggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatg 25901530  T
Q  118 aatttgataatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901529 aatttgataatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttt 25901430  T
Q  218 tgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901429 tgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttg 25901376  T

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Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 25915647 - 25915394
Alignment:
Q  18 cttccactttattggtttgatcatgataagaaccaaggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatg 117  Q
    ||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  25915647 cttcccctttattggtttcatcgtgataagagccaaggtgtttacttgagtggtactattaactggttggcacttcgcaattacttctattctgactatg 25915548  T
Q  118 aatttgataatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25915547 aatttgataatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggttt 25915448  T
Q  218 tgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915447 tgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttg 25915394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 36339960 - 36340090
Alignment:
Q  143 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagcca 242  Q
    |||||||||||  |||||||||||||||||||| || || ||| ||||||  ||||| ||||| |||   |||||| | ||||||||| | ||| |||||    
T  36339960 tgttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagcca 36340059  T
Q  243 acaattgtggttttgatggactccctttgct 273  Q
     |  ||  |||| ||||||||| ||||||||    
T  36340060 tctcttcgggttctgatggactgcctttgct 36340090  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 10571626 - 10571388
Alignment:
Q  18 cttccactttattggtttgatcatgataagaaccaaggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatg 117  Q
    ||||||||||| |||||| | | ||| |||||| | ||||| || ||||||||||| ||||||||| || | |||| | ||||||||||||| |||||||    
T  10571626 cttccactttactggtttaagcgtgaaaagaacaatggtgtgtatttgagtggtacaattaactggatgacccttcgcgattacttctattctgattatg 10571527  T
Q  118 aatttgataatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttt 217  Q
    || ||| |||||||||||  ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| | |||||||| |||||||||||    
T  10571526 aaattggtaatgttagtagtattactgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggttt 10571427  T
Q  218 tgacgaggtgccacgtgttcagccaacaattgtggtttt 256  Q
    |||||||||| |  ||||||| |||||  ||||||||||    
T  10571426 tgacgaggtgtcttgtgttcaaccaacgcttgtggtttt 10571388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 10553896 - 10553655
Alignment:
Q  18 cttccactttattggtttgatcatgataagaaccaaggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatg 117  Q
    ||||||||||| |||||| | | ||| |||||| | ||||| || |||| |||||| |||||||||||| | |||| | ||||||||||||| |||||||    
T  10553896 cttccactttactggtttaagcgtgaaaagaacaatggtgtgtatttgaatggtacaattaactggttgacccttcgcgattacttctattctgattatg 10553797  T
Q  118 aatttgataatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttt 217  Q
    || ||| ||||||||| || |||| ||||| |||||||| ||||||||| |||||||| || ||||||||||||||| | |||||||| || ||||||||    
T  10553796 aaattggtaatgttagcaatattagtgttgcgcaatatgggattgtttcacttgatctctcaactgagtcatacactgaattgttgcttccccggggttt 10553697  T
Q  218 tgacgaggtgccacgtgttcagccaacaattgtggttttgat 259  Q
    |||| ||||| | ||||||||||||||  |||||| ||||||    
T  10553696 tgacaaggtgtctcgtgttcagccaacgcttgtgggtttgat 10553655  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 10460343 - 10460591
Alignment:
Q  19 ttccactttattggtttgatcatgataagaaccaaggtgtttacttgagtggtactattaactggttggcacttcacaattacttctattcagattatga 118  Q
    |||||||||||||| || ||| |||||||||| | ||||| || |||| ||||||||||| ||||||||| |||||| |||||||  ||||| |||||||    
T  10460343 ttccactttattggatttatcgtgataagaacaacggtgtgtatttgaatggtactattagctggttggcccttcacgattactttgattcaaattatga 10460442  T
Q  119 atttgat---aatgttagtaagattactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggt 215  Q
     |||  |   || |   |||   ||||||||||| ||||||||||||||||  | ||||| ||| ||||| ||||||||||| ||||| | |||||||||    
T  10460443 tttttgttggaaagacggtagtgttactgttgagaaatatgtgattgtttcattggatctctcctctgagacatacactcagctgttgttgcctcggggt 10460542  T
Q  216 tttgacgaggtgccacgtgttcagccaacaattgtggttttgatggact 264  Q
    || || ||||||||||||  |||||||||| ||||||||||||||||||    
T  10460543 ttcgatgaggtgccacgttatcagccaacacttgtggttttgatggact 10460591  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 10482036 - 10482101
Alignment:
Q  153 tatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggtttt 218  Q
    ||||||||| |||| |||||||| || |||||| |||||||||| |||||||||||||||||||||    
T  10482036 tatgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcggggtttt 10482101  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 8443671 - 8443558
Alignment:
Q  151 aatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagccaacaattgt 250  Q
    |||||||||| |||||||||||||| ||||| |||||| |||||||| || || | |||| |||| ||||  ||| |||| ||  |||||||||| |||     
T  8443671 aatatgtgatagtttcgcttgatctctccaccgagtcacacactcagctgctgttgcctcagggtgttgataaggggccatgtcatcagccaacacttgc 8443572  T
Q  251 ggttttgatggact 264  Q
     |||||||||||||    
T  8443571 agttttgatggact 8443558  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 8447881 - 8447792
Alignment:
Q  141 actgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgcca 230  Q
    ||||||||  ||||| ||||||||||||||| | | ||||| |||||| |||||||| ||||| | |||| ||||||||| |||||||||    
T  8447881 actgttgatgaatatatgattgtttcgcttgctatctccaccgagtcacacactcagctgttgttgcctcagggttttgatgaggtgcca 8447792  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 10467898 - 10467963
Alignment:
Q  153 tatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggtttt 218  Q
    ||||||||| |||| |||||||| || |||||| |||||||||| |||||||||||||| ||||||    
T  10467898 tatgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcgaggtttt 10467963  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 6392661 - 6392732
Alignment:
Q  138 attactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctc 210  Q
    |||||||||||||||||||||||| |||| || | ||| ||||||||| |||||||| | |||||||| ||||    
T  6392661 attactgttgagcaatatgtgattctttcactcg-tctctccactgagacatacactaaattgttgctgcctc 6392732  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 10493520 - 10493596
Alignment:
Q  143 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttg 219  Q
    ||||||||||||||||||| ||||  | ||||| ||||||||| ||||||||||  ||||| | |||| ||||||||    
T  10493520 tgttgagcaatatgtgattctttcagtcgatctttccactgagacatacactcaactgttgttgcctcagggttttg 10493596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 1111032 - 1110987
Alignment:
Q  139 ttactgttgagcaatatgtgattgtttcgcttgatctgtccactga 184  Q
    |||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  1111032 ttaccgttgagcaacatgtgattgtttcacttgatctttccactga 1110987  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 26256620 - 26256719
Alignment:
Q  143 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagcca 242  Q
    ||||||||||| ||||||| ||||||||||||| || || ||| ||||||  ||||||||||| ||||  |||||||| |||||||||  ||||||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccatttgttcagcca 26256719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 26237459 - 26237546
Alignment:
Q  143 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgcca 230  Q
    ||||||||||| ||||||| ||||||||||||| || ||  || ||||||  ||||||||| | ||||  |||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacatacaaacagttgttgttgcctcaaggttttgatgaggtgcca 26237546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 19597828 - 19597752
Alignment:
Q  194 tcagttgttgctacctcggggttttgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttg 271  Q
    |||||||||||  ||||||||||||||  | ||||||| ||||| ||||||  |||| ||||||||||| ||||||||    
T  19597828 tcagttgttgccccctcggggttttgataatgtgccacctgttc-gccaactcttgttgttttgatggattccctttg 19597752  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 50645696 - 50645608
Alignment:
Q  157 tgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagccaaca 245  Q
    ||||| |||| |||||||| ||||| ||| ||||||||||  ||||||| |||||||||||| || || | ||||||  ||||||||||    
T  50645696 tgattctttcacttgatctctccaccgagacatacactcaactgttgctgcctcggggttttcacaagcttccacgttatcagccaaca 50645608  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 4366725 - 4366632
Alignment:
Q  138 attactgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccac 231  Q
    ||||| |||||||||| ||| ||||||||||||||||||   || ||| |||||| ||| |  ||||| ||||| |||||||| || |||||||    
T  4366725 attaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccac 4366632  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 23086643 - 23086714
Alignment:
Q  159 attgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgcca 230  Q
    ||||||||||||||||| || || ||| ||||||  ||||||||||| ||||  |||||||| |||||||||    
T  23086643 attgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgcca 23086714  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 19746919 - 19746869
Alignment:
Q  143 tgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacac 193  Q
    ||||||||||| |||||||||||| |||||||| || |||||| |||||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacac 19746869  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 25376921 - 25376971
Alignment:
Q  145 ttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactc 195  Q
    ||||| ||||||||||||||||||| ||||| || |||||| |||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacactc 25376971  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 25376860 - 25376908
Alignment:
Q  54 ggtgtttacttgagtggtactattaactggttggcacttcacaattact 102  Q
    ||||| || |||||||||||||||| ||||||||| |||| ||||||||    
T  25376860 ggtgtgtatttgagtggtactattacctggttggcccttcgcaattact 25376908  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 42846871 - 42846838
Alignment:
Q  54 ggtgtttacttgagtggtactattaactggttgg 87  Q
    |||||||| |||||||||||||||||||||||||    
T  42846871 ggtgtttatttgagtggtactattaactggttgg 42846838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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