View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6328_high_27 (Length: 260)
Name: NF6328_high_27
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 46524583 - 46524832
Alignment:
| Q |
1 |
cctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46524583 |
cctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagc |
46524682 |
T |
|
| Q |
101 |
tgagagctacattctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
46524683 |
tgagagctacaatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttctttacctttctcagcaatatgcat |
46524782 |
T |
|
| Q |
201 |
tttgattccattcacttccactcttctgtgttctattccttccatctgtg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46524783 |
tttgattccattcacttccactcttctgtgttctattccttccatctgtg |
46524832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 46532136 - 46532382
Alignment:
| Q |
1 |
cctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagc |
100 |
Q |
| |
|
||||| ||||||||||| |||||||| || | |||||| ||||| |||||||||||||||||||| ||||| |||||||| || ||||| |||||||||| |
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| T |
46532136 |
cctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcggtgtcaccatagccacgcagatctggagcaacggcgcggtaaccgagggagc |
46532235 |
T |
|
| Q |
101 |
tgagagctacattctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcat |
200 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
46532236 |
caagagctacaatttggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttcttttcctttttcagcaatatgcat |
46532335 |
T |
|
| Q |
201 |
tttgattccattcacttccactcttctgtgttctattccttccatct |
247 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
46532336 |
tttgattccattcacctccactgttctgtgttctattccttccatct |
46532382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 46326678 - 46326435
Alignment:
| Q |
4 |
actatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctga |
103 |
Q |
| |
|
|||| |||||||| ||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
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| T |
46326678 |
actacgtgaaaacatgtgtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagcaacagcacggtaaccgagggatccga |
46326579 |
T |
|
| Q |
104 |
gagctacattctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcatttt |
203 |
Q |
| |
|
|||| || ||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
46326578 |
gagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcatttt |
46326479 |
T |
|
| Q |
204 |
gattccattcacttccactcttctgtgttctattccttccatct |
247 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| |||||||| |
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|
| T |
46326478 |
gattccattcacttccactgttctatgttctattctttccatct |
46326435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 46322976 - 46322730
Alignment:
| Q |
1 |
cctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| || | |||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||||||||| |||| |
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|
| T |
46322976 |
cctacaatgtgaaaacctgtgtagctgcttattgaagatggagcctcagtgtcaccatagccacgtagatccggagctacggcgcggtagccgagagagc |
46322877 |
T |
|
| Q |
101 |
tgagagctacattctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcat |
200 |
Q |
| |
|
|||||| || ||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
46322876 |
cgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcat |
46322777 |
T |
|
| Q |
201 |
tttgattccattcacttccactcttctgtgttctattccttccatct |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46322776 |
tttgattccattcacttccactcttctgtgctctattccttccatct |
46322730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 46479104 - 46479333
Alignment:
| Q |
18 |
tgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctacattctgg |
117 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||| ||||| || ||||| |
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|
| T |
46479104 |
tgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctgg |
46479203 |
T |
|
| Q |
118 |
tggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcattttgattccattcactt |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
46479204 |
tggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcactt |
46479303 |
T |
|
| Q |
218 |
ccactcttctgtgttctattccttccatct |
247 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
46479304 |
ccaccgttctgtgttctattccttccatct |
46479333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 46520534 - 46520762
Alignment:
| Q |
18 |
tgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctacattctgg |
117 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||||| ||||| || ||||| |
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|
| T |
46520534 |
tgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctgg |
46520633 |
T |
|
| Q |
118 |
tggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcattttgattccattcactt |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
46520634 |
tggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcactt |
46520733 |
T |
|
| Q |
218 |
ccactcttctgtgttctattccttccatc |
246 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
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|
| T |
46520734 |
ccaccgttctgtgttctattccttccatc |
46520762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 46490306 - 46490525
Alignment:
| Q |
18 |
tgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctacattctgg |
117 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||| ||||| | ||||| |
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|
| T |
46490306 |
tgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagcgcggtaaccgagggagccaagagcagaaatctgg |
46490405 |
T |
|
| Q |
118 |
tggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcattttgattccattcactt |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46490406 |
tggcgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtccttctttacctttctcagcaatatgcattttgatgccattcactt |
46490505 |
T |
|
| Q |
218 |
ccactcttctgtgttctatt |
237 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
46490506 |
ccactgttctgtgttctatt |
46490525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 46516893 - 46517122
Alignment:
| Q |
18 |
tgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctacattctgg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||||| |||||| ||||| || | |||||||| |||||||||||||| ||| ||||| |
|
|
| T |
46516893 |
tgtgtagctactaactgaagtgggagcatcagtgtcaccgtagccacagagatctggagccacggtgcggtagccaagggagctgagagcaacaatctgg |
46516992 |
T |
|
| Q |
118 |
tggcgccatgaataccagagttctgggaagccatgaaggaacaagacaactggtccttcttttcctttctcagcaatatgcattttgattccattcactt |
217 |
Q |
| |
|
||||||||||| ||||||| ||| || || |||||||||||||| || | ||||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
46516993 |
tggcgccatgagtaccagatttcaggaaaaccatgaaggaacaatactattggtccttcttttcctttctctgcgacatgcattttgattccattcactt |
46517092 |
T |
|
| Q |
218 |
ccactcttctgtgttctattccttccatct |
247 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| |
|
|
| T |
46517093 |
ccactgttctgtgctctactccttccatct |
46517122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 55 - 247
Target Start/End: Original strand, 46494641 - 46494833
Alignment:
| Q |
55 |
ccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctacattctggtggcgccatgaataccagagttctgggaagccatgaa |
154 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||||| ||||| |||| |||||| || ||||||||||||| || ||||||||||| ||||| || |||| |
|
|
| T |
46494641 |
ccataaccacgaagatcgggagccacagcccggtaaccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaa |
46494740 |
T |
|
| Q |
155 |
ggaacaagacaactggtccttcttttcctttctcagcaatatgcattttgattccattcacttccactcttctgtgttctattccttccatct |
247 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
46494741 |
ggaacaggacaacaggtccttcttttcctttttcagcaatatgcattttgattccattcacttccactgttctgtgctctattccttccatct |
46494833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 7475426 - 7475308
Alignment:
| Q |
10 |
tgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagcta |
109 |
Q |
| |
|
||||| ||||||||||| || | |||||| |||| ||||||||||||||||||||||||||| | ||| || || |||||||||||||||||||||||| |
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|
| T |
7475426 |
tgaaaccctgtgtagctgcttattgaagatggagaatcggtgtcaccatagccacggagatcagtagccacgacatggtagccgagggagctgagagcta |
7475327 |
T |
|
| Q |
110 |
cattctggtggcgccatga |
128 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
7475326 |
taatctggtggcgccatga |
7475308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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