View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6328_high_38 (Length: 228)

Name: NF6328_high_38
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6328_high_38
NF6328_high_38
[»] chr6 (9 HSPs)
chr6 (7-228)||(12780625-12780846)
chr6 (7-228)||(12784804-12785026)
chr6 (7-80)||(16851987-16852060)
chr6 (7-80)||(34905429-34905502)
chr6 (7-47)||(10133205-10133245)
chr6 (9-80)||(21987387-21987458)
chr6 (9-48)||(32112763-32112802)
chr6 (174-202)||(11722948-11722976)
chr6 (7-47)||(32122888-32122928)
[»] chr8 (11 HSPs)
chr8 (7-97)||(17499230-17499320)
chr8 (7-47)||(1977220-1977260)
chr8 (7-48)||(8903945-8903986)
chr8 (7-97)||(16983487-16983579)
chr8 (10-48)||(8914867-8914905)
chr8 (99-172)||(33385199-33385270)
chr8 (7-48)||(6098823-6098864)
chr8 (7-48)||(9952803-9952844)
chr8 (7-48)||(24055971-24056012)
chr8 (99-158)||(10117012-10117069)
chr8 (7-47)||(11962729-11962768)
[»] chr4 (17 HSPs)
chr4 (7-97)||(8109049-8109141)
chr4 (7-80)||(47009282-47009355)
chr4 (124-172)||(4406269-4406315)
chr4 (7-97)||(26361303-26361395)
chr4 (7-48)||(43771219-43771260)
chr4 (7-47)||(20454631-20454671)
chr4 (7-48)||(722250-722291)
chr4 (7-48)||(754626-754667)
chr4 (7-48)||(24834671-24834712)
chr4 (7-48)||(39471250-39471291)
chr4 (124-172)||(39533822-39533868)
chr4 (124-172)||(40952376-40952422)
chr4 (7-48)||(49077342-49077383)
chr4 (7-48)||(49242263-49242304)
chr4 (7-48)||(50164488-50164529)
chr4 (174-202)||(26496235-26496263)
chr4 (174-202)||(52138719-52138747)
[»] chr5 (12 HSPs)
chr5 (7-98)||(41330389-41330480)
chr5 (7-80)||(25919304-25919377)
chr5 (8-48)||(17537148-17537188)
chr5 (7-47)||(31885878-31885918)
chr5 (7-54)||(28434858-28434905)
chr5 (14-80)||(30325888-30325954)
chr5 (10-48)||(34368456-34368494)
chr5 (99-171)||(20518200-20518270)
chr5 (124-171)||(1100086-1100131)
chr5 (9-61)||(25710505-25710557)
chr5 (7-47)||(28090276-28090316)
chr5 (7-47)||(36337937-36337977)
[»] chr3 (20 HSPs)
chr3 (9-91)||(18427153-18427235)
chr3 (7-94)||(52123954-52124043)
chr3 (7-80)||(28529344-28529417)
chr3 (7-48)||(29755593-29755634)
chr3 (7-97)||(37776698-37776790)
chr3 (7-47)||(24429072-24429112)
chr3 (99-170)||(26121580-26121649)
chr3 (99-170)||(26244421-26244490)
chr3 (9-80)||(20791391-20791462)
chr3 (124-170)||(26243745-26243789)
chr3 (8-46)||(22856282-22856320)
chr3 (7-48)||(20493491-20493532)
chr3 (124-172)||(27224608-27224654)
chr3 (7-48)||(29588779-29588820)
chr3 (7-48)||(41451941-41451982)
chr3 (7-48)||(50156706-50156747)
chr3 (124-172)||(52866445-52866491)
chr3 (174-202)||(13621082-13621110)
chr3 (12-48)||(38138628-38138664)
chr3 (174-202)||(49379864-49379892)
[»] chr2 (13 HSPs)
chr2 (7-48)||(7919316-7919357)
chr2 (7-69)||(9470174-9470236)
chr2 (9-47)||(25238324-25238362)
chr2 (7-48)||(38464256-38464297)
chr2 (11-47)||(44274331-44274367)
chr2 (99-172)||(32630447-32630518)
chr2 (124-172)||(1961375-1961421)
chr2 (6-47)||(14489586-14489627)
chr2 (124-172)||(15119805-15119851)
chr2 (7-48)||(45554652-45554693)
chr2 (7-79)||(19639186-19639258)
chr2 (7-79)||(19837779-19837851)
chr2 (8-48)||(32856181-32856221)
[»] chr7 (12 HSPs)
chr7 (7-96)||(46517384-46517475)
chr7 (7-48)||(12263482-12263523)
chr7 (7-48)||(25686881-25686922)
chr7 (7-47)||(6442258-6442298)
chr7 (4-47)||(19422881-19422924)
chr7 (7-97)||(14795224-14795314)
chr7 (7-97)||(15242216-15242306)
chr7 (7-80)||(22190032-22190105)
chr7 (7-48)||(27888375-27888416)
chr7 (7-48)||(31502510-31502551)
chr7 (7-48)||(36845568-36845609)
chr7 (174-202)||(41328381-41328409)
[»] chr1 (15 HSPs)
chr1 (7-110)||(11987719-11987822)
chr1 (7-97)||(8899107-8899199)
chr1 (7-48)||(33193143-33193184)
chr1 (7-47)||(33114064-33114104)
chr1 (9-80)||(19101615-19101686)
chr1 (9-48)||(37552995-37553034)
chr1 (7-45)||(49730957-49730995)
chr1 (7-48)||(10659814-10659855)
chr1 (124-172)||(14885347-14885393)
chr1 (124-172)||(14885505-14885551)
chr1 (7-48)||(41948192-41948233)
chr1 (7-48)||(41958176-41958217)
chr1 (174-202)||(14478428-14478456)
chr1 (99-162)||(26674224-26674285)
chr1 (174-202)||(51445752-51445780)
[»] scaffold0113 (1 HSPs)
scaffold0113 (124-172)||(40481-40527)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 12780846 - 12780625
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagagtattgctagcattactcccattcaat 106  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  12780846 caattttcaaagtgtagatccacaatgatttaaaccaataagggaatgaatattagagagggtgttcaaaagagtattgctagcattacccccattcaat 12780747  T
Q  107 taatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatgtttgaataattaataggatctatggtggaccagtta 206  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12780746 taatgaaacaaatgtcatttatgatagaccacatacatatcatttaatgaataaatctacaatgtttgaataattaataggatctatggtggaccagtta 12780647  T
Q  207 acggccaaagatttatttgaat 228  Q
    ||||||||||||||||||||||    
T  12780646 acggccaaagatttatttgaat 12780625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 12785026 - 12784804
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag--tattgctagcattactcccattca 104  Q
    |||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||  |||||||||||||||   ||||||||||||||||||||||||    
T  12785026 caattttcaaagtgtagatccataatgatttaaaccaataagagaatggatattagaaagggtattcaaaagacaatattgctagcattactcccattca 12784927  T
Q  105 attaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatgtttgaataattaataggatctatggtggaccagt 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  12784926 attaatgaaa-aaatgttatttattatagaccacatacatatcatttaatgaataaatctataatatttgaataattaataggatctatggtggaccagt 12784828  T
Q  205 taacggccaaagatttatttgaat 228  Q
    ||||||||||||||||||||||||    
T  12784827 taacggccaaagatttatttgaat 12784804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 16852060 - 16851987
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||||||||||||||||| ||||||||| |||||||||||||  | ||| ||||||||||| | ||||||||||    
T  16852060 caattttcaaagtgtagacccacaatgatttaaaccaataagagagtgggtattagggaggatgttcaaaagag 16851987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 34905429 - 34905502
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||||||||||||||||| ||||||||| |||||||||||||  | ||  |||||| |||||| ||||||||||    
T  34905429 caattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgttcaaaagag 34905502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 10133245 - 10133205
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  10133245 caattttcaaagtgtagaaccacaatgatttaaaccaataa 10133205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 21987387 - 21987458
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||| |||||||||||||| |||||| ||||||||||||| || ||  |||||| ||| || ||||||||||    
T  21987387 atttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagag 21987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32112802 - 32112763
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  32112802 attttcaaagtgtagatccacaatgatttaaaacaataag 32112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 11722976 - 11722948
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  11722976 gaataattaataggatctatggtggacca 11722948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 32122888 - 32122928
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||| ||||||||| |||| |||||||    
T  32122888 caattttcaaagtgtagacccacaatgatttaagccaataa 32122928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 17499320 - 17499230
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagagtattgctagcattactc 97  Q
    |||||||||||||||||||||||||||| |||||||||||||  | ||  |||||| ||| ||  |||||||||| |||||||||||||||    
T  17499320 caattttcaaagtgtagatccacaatgatttaaaccaataagagagtgagtattagagagagttgtcaaaagagtgttgctagcattactc 17499230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 1977260 - 1977220
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  1977260 caattttcaaagtgtagatccacaatgatttaaaccaataa 1977220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 8903945 - 8903986
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  8903945 caattttcaaagtgtagacccacaatgatttaaaccaataag 8903986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 16983487 - 16983579
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaa--agagtattgctagcattactc 97  Q
    ||||||||||||||||||  |||||||| |||||||||||||  | ||  |||||| ||| || ||||||  ||||| |||||||||||||||    
T  16983487 caattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcattactc 16983579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 8914867 - 8914905
Alignment:
Q  10 ttttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  8914867 ttttcaaagtgtagacccacaatgatttaaaccaataag 8914905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 33385270 - 33385199
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    |||||||||||||| | | ||  |||||||||||||||||||||  |||||||||  |||||||||| ||||||    
T  33385270 cattcaattaatgatatatataatatttattatagaccacatac--atcatttaaaaaataaatctaaaatgtt 33385199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 6098864 - 6098823
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||||||||||| | ||||| |||||||    
T  6098864 caattttcaaagtgtagatccacaataatttaaatcaataag 6098823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 9952844 - 9952803
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||| | ||||||||| |||||||||||||    
T  9952844 caattttcaaagtgtaaacccacaatgatttaaaccaataag 9952803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 24056012 - 24055971
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||| | |||||||||||||    
T  24056012 caattttcaaagtgtagacccacaattatttaaaccaataag 24055971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 10117069 - 10117012
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaat 158  Q
    ||||||||||||||   | ||| |||||||||||||||||||||  ||||||||||||||    
T  10117069 cattcaattaatgatgtatatgatatttattatagaccacatac--atcatttaatgaat 10117012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 11962768 - 11962729
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  11962768 caattttcaaagtgtagatcca-aatgatttaaaccaataa 11962729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 8109049 - 8109141
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaa--agagtattgctagcattactc 97  Q
    |||||||||||||||||| ||||||||| ||||||||||||| || ||  |||||| ||| || ||||||  ||||| |||||||||||||||    
T  8109049 caattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagcattactc 8109141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 47009282 - 47009355
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    ||||||||||||||||||| |||||||| ||||||||||||| || ||  |||||| |||||| ||||||||||    
T  47009282 caattttcaaagtgtagatacacaatgatttaaaccaataagaaagtgagtattagagagggtgttcaaaagag 47009355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 4406315 - 4406269
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  4406315 tttattatagaccacatacat--catttaatgaataaatctaaaatgtt 4406269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 26361395 - 26361303
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaa--agagtattgctagcattactc 97  Q
    |||| ||||||||||||| ||| ||||| |||||||||||||  | ||  |||||| |||||| ||||||  ||||| |||||||||||||||    
T  26361395 caatattcaaagtgtagacccataatgatttaaaccaataagtgagtgagtattagagagggtgttcaaaagagagtgttgctagcattactc 26361303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 43771219 - 43771260
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  43771219 caattttcaaagtgtagacccacaatgatttaaaccaataag 43771260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 20454631 - 20454671
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  20454631 caattttcaaagtgtagatccacaatgatttaaatcaataa 20454671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 722250 - 722291
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  722250 caatttttaaagtgtagacccacaatgatttaaaccaataag 722291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 754667 - 754626
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  754667 caatttttaaagtgtagacccacaatgatttaaaccaataag 754626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 24834671 - 24834712
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||| | |||||||||||||    
T  24834671 caattttcaaagtgtagacccacaataatttaaaccaataag 24834712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 39471250 - 39471291
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||| ||||||||||||| ||||||||| |||||||||||||    
T  39471250 caatcttcaaagtgtagacccacaatgatttaaaccaataag 39471291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 39533822 - 39533868
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  39533822 tttattatagatcacatacat--catttaatgaataaatctaaaatgtt 39533868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 40952422 - 40952376
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||||||||||  ||||||||||||||| |||||| ||||||    
T  40952422 tttattatagaccacata--tatcatttaatgaatgaatctaaaatgtt 40952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 49077342 - 49077383
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  49077342 caatttttaaagtgtagacccacaatgatttaaaccaataag 49077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 49242263 - 49242304
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||| |||||||| |||||||| |||||||||||||    
T  49242263 caattttcaatgtgtagattcacaatgatttaaaccaataag 49242304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 50164488 - 50164529
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||||||||  |||||||| |||||||||||||    
T  50164488 caattttcaaagtgtagactcacaatgatttaaaccaataag 50164529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 26496235 - 26496263
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  26496235 gaataattaataggatctatggtggacca 26496263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 52138719 - 52138747
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  52138719 gaataattaataggatctatggtggacca 52138747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 41330480 - 41330389
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatgga-tattagggagggtattcaaaagagtattgctagcattactcc 98  Q
    ||||||||||||||||||  |||||||| |||||||||||| |||||| | |||||  ||| || ||||||||||| ||||||||||||||||    
T  41330480 caattttcaaagtgtagactcacaatgatttaaaccaataa-gaaatgtagtattaaagagtgtgttcaaaagagtgttgctagcattactcc 41330389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 25919304 - 25919377
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    ||||||||||||||||||  |||||||| ||||||||||||  ||||| ||||||  ||  |||||||||||||    
T  25919304 caattttcaaagtgtagactcacaatgatttaaaccaataaaaaaatgaatattaaagaaagtattcaaaagag 25919377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 17537188 - 17537148
Alignment:
Q  8 aattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  17537188 aattttcaaagtgtagatccataatgatttaaaccaataag 17537148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 31885918 - 31885878
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  31885918 caattttcaaagtgtagatctacaatgatttaaaccaataa 31885878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 28434905 - 28434858
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatg 54  Q
    ||||||||||||| |||| ||||||||| ||||||||||||| |||||    
T  28434905 caattttcaaagtttagacccacaatgatttaaaccaataagaaaatg 28434858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 30325954 - 30325888
Alignment:
Q  14 caaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||||||||||||| |||||| ||||||||||||| || ||  |||||| ||| || ||||||||||    
T  30325954 caaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagag 30325888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 34368456 - 34368494
Alignment:
Q  10 ttttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  34368456 ttttcaaagtgtagacccacaatgatttaaaccaataag 34368494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 20518270 - 20518200
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatgt 171  Q
    |||||| |||||||  || ||| | |||||||||||||||||||  |||||| |||||||||||||| |||||    
T  20518270 cattcatttaatgatgcacatggtctttattatagaccacatac--atcattaaatgaataaatctaaaatgt 20518200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 1100131 - 1100086
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgt 171  Q
    |||||||||||||||||||  |||||||||||||| |||||| |||||    
T  1100131 tttattatagaccacatac--atcatttaatgaatgaatctaaaatgt 1100086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 25710557 - 25710505
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatatta 61  Q
    |||||||||||||||| ||||||| | |||||||||||||  |||| ||||||    
T  25710557 attttcaaagtgtagacccacaataatttaaaccaataagagaatgaatatta 25710505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 28090316 - 28090276
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    ||||||||||||| |||||| ||||||| ||||||||||||    
T  28090316 caattttcaaagtttagatcaacaatgatttaaaccaataa 28090276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 36337977 - 36337937
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||| ||||||||||| ||||||||| ||||||||||||    
T  36337977 caatttccaaagtgtagacccacaatgatttaaaccaataa 36337937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 18427235 - 18427153
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagagtattgctagca 91  Q
    |||||||||||||||| ||||||||| |||||||||||||  | ||  |||||| |||||| ||||| ||||| |||||||||    
T  18427235 attttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgttcaagagagtgttgctagca 18427153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 52124043 - 52123954
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaa--agagtattgctagcatta 94  Q
    |||||||||||||||||| ||||||||| ||||||||||||| || ||  |||||| ||| || ||||||  ||||| ||||||||||||    
T  52124043 caattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagcatta 52123954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 28529344 - 28529417
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||||||||||||||||| ||||||||| |||||||||||||  | ||  |||||| |||||| ||||||||||    
T  28529344 caattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagggtgttcaaaagag 28529417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 29755593 - 29755634
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  29755593 caattttcaaagtgtagatcaacaatgatttaaaccaataag 29755634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 37776790 - 37776698
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattc--aaaagagtattgctagcattactc 97  Q
    |||||||||||||||||| | ||||||| |||||||| ||||  | ||  |||||| |||||| |||  |||||||| |||||||||||||||    
T  37776790 caattttcaaagtgtagacctacaatgatttaaaccactaagagagtgagtattagagagggtgttcataaaagagtgttgctagcattactc 37776698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 24429112 - 24429072
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  24429112 caatttttaaagtgtagatccacaatgatttaaaccaataa 24429072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 26121580 - 26121649
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatg 170  Q
    ||||||||||||||   | ||| | |||||||||||||||||||||  ||||||||||||||||||| ||||    
T  26121580 cattcaattaatgatgtatatggtctttattatagaccacatacat--catttaatgaataaatctaaaatg 26121649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 26244421 - 26244490
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatg 170  Q
    ||||||||||||||   | ||| | |||||||||||||||||||||  ||||||||||||||||||| ||||    
T  26244421 cattcaattaatgatgtatatggtctttattatagaccacatacat--catttaatgaataaatctaaaatg 26244490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 20791391 - 20791462
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||| |||||||||||||| |||||| ||||||||||||| || ||  |||||| ||| || ||||||||||    
T  20791391 atttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagag 20791462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 26243745 - 26243789
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatg 170  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||    
T  26243745 tttattatagaccacatacat--catttaatgaataaatctaaaatg 26243789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 22856320 - 22856282
Alignment:
Q  8 aattttcaaagtgtagatccacaatgaattaaaccaata 46  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  22856320 aattttcaaagtgtagatccacaattatttaaaccaata 22856282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 20493532 - 20493491
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||| ||||||||||||| ||||||||| |||||||||||||    
T  20493532 caatattcaaagtgtagacccacaatgatttaaaccaataag 20493491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 27224654 - 27224608
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  27224654 tttattatagatcacatacat--catttaatgaataaatctaaaatgtt 27224608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 29588820 - 29588779
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  29588820 caattttcaaagtgtagacccacaatgatttaaatcaataag 29588779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 41451982 - 41451941
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||| ||||| ||||||||| |||||||||||||    
T  41451982 caattttcaaagagtagacccacaatgatttaaaccaataag 41451941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 50156747 - 50156706
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  50156747 caattttaaaagtgtagacccacaatgatttaaaccaataag 50156706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 52866491 - 52866445
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    |||||||||||||||||||  |||||||||||||| |||||| ||||||    
T  52866491 tttattatagaccacatac--atcatttaatgaatgaatctaaaatgtt 52866445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 13621110 - 13621082
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  13621110 gaataattaataggatctatggtggacca 13621082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 38138664 - 38138628
Alignment:
Q  12 ttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||| |||||||||||||| |||||||||||||    
T  38138664 ttcaaagtatagatccacaatgatttaaaccaataag 38138628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 49379892 - 49379864
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  49379892 gaataattaataggatctatggtggacca 49379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7919357 - 7919316
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  7919357 caattttcaaagtgtagatccacaatgatttaaaccaataag 7919316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 9470174 - 9470236
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggt 69  Q
    |||||||||||||||||| ||||||||| |||||||||||||  | || ||||||| ||||||    
T  9470174 caattttcaaagtgtagacccacaatgatttaaaccaataagagagtgaatattagagagggt 9470236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 25238362 - 25238324
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  25238362 attttcaaagtgtagatccacaatgatttaaaccaataa 25238324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 38464256 - 38464297
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  38464256 caattttcaaagtgtagacccacaatgatttaaaccaataag 38464297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 44274331 - 44274367
Alignment:
Q  11 tttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44274331 tttcaaagtgtagatccacaatgatttaaaccaataa 44274367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 32630447 - 32630518
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||||||   | ||| | |||||||||||| ||||||||  ||||||||||||||||||| ||||||    
T  32630447 cattcaattaatgatgtatatggtctttattatagactacatacat--catttaatgaataaatctaaaatgtt 32630518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 1961375 - 1961421
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    |||||||||||||||||||  |||||||||||||| |||||| ||||||    
T  1961375 tttattatagaccacatac--atcatttaatgaatgaatctaaaatgtt 1961421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 14489627 - 14489586
Alignment:
Q  6 acaattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||| |||||||||||||||||| | ||||||||||||    
T  14489627 acaatttttaaagtgtagatccacaataatttaaaccaataa 14489586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 15119851 - 15119805
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    |||||||||||||||||||  |||||||||||||| |||||| ||||||    
T  15119851 tttattatagaccacatac--atcatttaatgaatgaatctaaaatgtt 15119805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 45554652 - 45554693
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||| ||||||||| ||||||||| |||||||||||||    
T  45554652 caattttccaagtgtagacccacaatgatttaaaccaataag 45554693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 19639186 - 19639258
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaaga 79  Q
    |||||||||||||| ||| | ||||||| |||||||||||||  | || ||||||  |||| |||||||||||    
T  19639186 caattttcaaagtgcagacctacaatgatttaaaccaataagagagtgaatattatagaggctattcaaaaga 19639258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 19837779 - 19837851
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaaga 79  Q
    |||||||||||||| ||| | ||||||| |||||||||||||  | || ||||||  |||| |||||||||||    
T  19837779 caattttcaaagtgcagacctacaatgatttaaaccaataagagagtgaatattatagaggctattcaaaaga 19837851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 32856221 - 32856181
Alignment:
Q  8 aattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||||||||||| | ||| |||||||||||||    
T  32856221 aattttcaaagtgtagatccatagtgatttaaaccaataag 32856181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 46517384 - 46517475
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaa--agagtattgctagcattact 96  Q
    ||||||||||||||||||  |||||||| |||||||||||||  ||||  |||||| |||| | ||||||  ||||| ||||||||||||||    
T  46517384 caattttcaaagtgtagactcacaatgatttaaaccaataagagaatgagtattagagaggctgttcaaaagagagtgttgctagcattact 46517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 12263523 - 12263482
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  12263523 caattttcaaagtgtagacccacaatgatttaaaccaataag 12263482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 25686922 - 25686881
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  25686922 caattttcaaagtgtagacccacaatgatttaaaccaataag 25686881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 6442258 - 6442298
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  6442258 caattttcaaagtgtagacccacaatgatttaaaccaataa 6442298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 19422924 - 19422881
Alignment:
Q  4 tcacaattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||    
T  19422924 tcactattttcgaagtgtagatccacaatgatttaaaccaataa 19422881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 14795224 - 14795314
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagagtattgctagcattactc 97  Q
    ||||||| |||||||| ||||| ||||| |||||| ||||||  | ||  ||| || ||| || ||||||||||| |||||||||||||||    
T  14795224 caatttttaaagtgtatatccataatgatttaaactaataagagagtgagtataagagagagtgttcaaaagagtgttgctagcattactc 14795314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 15242216 - 15242306
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagagtattgctagcattactc 97  Q
    ||||||| |||||||| ||||| ||||| |||||| ||||||  | ||  ||| || ||| || ||||||||||| |||||||||||||||    
T  15242216 caatttttaaagtgtatatccataatgatttaaactaataagagagtgagtataagagagagtgttcaaaagagtgttgctagcattactc 15242306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 22190032 - 22190105
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    |||||||||||||||||| || |||||| ||||||||||||   | ||  |||||| |||||| ||||||||||    
T  22190032 caattttcaaagtgtagacccgcaatgatttaaaccaataaacgagtgagtattagagagggtgttcaaaagag 22190105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 27888375 - 27888416
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||| |||||||||| ||||||||| |||||||||||||    
T  27888375 caatttttaaagtgtagacccacaatgatttaaaccaataag 27888416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 31502551 - 31502510
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||||||||  |||||||| |||||||||||||    
T  31502551 caattttcaaagtgtagactcacaatgatttaaaccaataag 31502510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 36845609 - 36845568
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    ||||||||||||| |||| ||||||||| |||||||||||||    
T  36845609 caattttcaaagtatagacccacaatgatttaaaccaataag 36845568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 41328409 - 41328381
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  41328409 gaataattaataggatctatggtggacca 41328381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 11987719 - 11987822
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaa--agagtattgctagcattactcccattca 104  Q
    |||||||||||||||||| ||||||||| |||||||| ||||  | ||||||||||  || || || |||  ||||| ||||||||||||||  ||||||    
T  11987719 caattttcaaagtgtagacccacaatgatttaaaccattaagagagtggatattagaaagagtgtttaaaagagagtgttgctagcattact--cattca 11987816  T
Q  105 attaat 110  Q
    ||||||    
T  11987817 attaat 11987822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 8899107 - 8899199
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag--tattgctagcattactc 97  Q
    ||||||||||||||||| |||||||| | |||||||||||||  | ||  |||||| ||| || ||||||||||  | |||||||||||||||    
T  8899107 caattttcaaagtgtaggtccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagagattgttgctagcattactc 8899199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 33193143 - 33193184
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  33193143 caattttcaaagtgtagacccacaatgatttaaaccaataag 33193184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 33114064 - 33114104
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataa 47  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  33114064 caattttcaaagtgtagatccagaatgatttaaaccaataa 33114104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19101686 - 19101615
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataaggaaatggatattagggagggtattcaaaagag 80  Q
    ||||||||||||||||||  |||||| ||||||||||||| || ||  |||||| ||| || ||||||||||    
T  19101686 attttcaaagtgtagatctgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaagag 19101615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37553034 - 37552995
Alignment:
Q  9 attttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  37553034 attttcaaagtgtagatccacaatgatttaaatcaataag 37552995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 49730957 - 49730995
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaat 45  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  49730957 caattttcaaagtgtagacccacaatgatttaaaccaat 49730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 10659855 - 10659814
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| |||| |||| |||||||||||||    
T  10659855 caattttcaaagtgtagacccacgatgatttaaaccaataag 10659814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 14885393 - 14885347
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||||||||||||||  ||||||||||||||| || ||||||    
T  14885393 tttattatagaccacatacata--atttaatgaataaatttaaaatgtt 14885347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 14885551 - 14885505
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||||||||||||||  ||||||||||||||| || ||||||    
T  14885551 tttattatagaccacatacata--atttaatgaataaatttaaaatgtt 14885505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 41948233 - 41948192
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||| ||||||||||| ||||| |||||||    
T  41948233 caattttcaaagtgtaaatccacaatgatttaaatcaataag 41948192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 41958176 - 41958217
Alignment:
Q  7 caattttcaaagtgtagatccacaatgaattaaaccaataag 48  Q
    |||||||||||||||||| ||||| ||| |||||||||||||    
T  41958176 caattttcaaagtgtagacccacagtgatttaaaccaataag 41958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 14478456 - 14478428
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  14478456 gaataattaataggatctatggtggacca 14478428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 26674285 - 26674224
Alignment:
Q  99 cattcaattaatgaaacaaatgttatttattatagaccacatacatatcatttaatgaataaat 162  Q
    ||||||||||||||   | ||| | ||||||||||||||||||||||  |||||||||||||||    
T  26674285 cattcaattaatgatgtatatggtctttattatagaccacatacata--atttaatgaataaat 26674224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 51445780 - 51445752
Alignment:
Q  174 gaataattaataggatctatggtggacca 202  Q
    |||||||||||||||||||||||||||||    
T  51445780 gaataattaataggatctatggtggacca 51445752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 40527 - 40481
Alignment:
Q  124 tttattatagaccacatacatatcatttaatgaataaatctacaatgtt 172  Q
    ||||||||||||| |||||||  ||||||||||||||||||| ||||||    
T  40527 tttattatagaccgcatacat--catttaatgaataaatctaaaatgtt 40481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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