View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_high_6 (Length: 560)
Name: NF6328_high_6
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 6 - 541
Target Start/End: Complemental strand, 4774883 - 4774348
Alignment:
| Q |
6 |
gtccaagaatattcgacacaatgaagtgcagtaagaaaaagtttataagagatcatgcatttctctctacaaatccttagatattgtaaagataattagt |
105 |
Q |
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| T |
4774883 |
gtccaataatattcgacacaatgaagtgcagtaagaaaaagtttataagagatcatgaatttctctctacaaatccttagatattgtaaagataattact |
4774784 |
T |
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| Q |
106 |
tagtttctatnnnnnnnnnnnntctgttgggaccattggagaatacttgccgttgcaaccttccccagcttcaatctgtcacgtacatgctatgaaaata |
205 |
Q |
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| T |
4774783 |
tagtttctataaaaaaaaaaaatctgttgggaccattggaaaatacttgccgttgcaaccttccccagcttcaatctgtcacgtacatgctataaaaata |
4774684 |
T |
|
| Q |
206 |
tgttaaataaaatagaggaatcactttatatatttgcactgaaatattttttacgtgacttacatgtctcattcatcttatgatctcacgattctcagca |
305 |
Q |
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| T |
4774683 |
tgttaaataaaatagaggaatcactttatatatttacactgaaatattttttacgtgacttacatgtctcattcatcttatgatctcacgattctcagca |
4774584 |
T |
|
| Q |
306 |
tattcgtatatgccaacactaatcacataatttcacacgcttacacgcattaatttattatcataaannnnnnnnacaactggatctttttccacttcta |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4774583 |
tattcgtatatgccaacactaatcacataatttcacacgcttacacgcattaatttattatcataaaatttatttacaactggatctttttccacttcta |
4774484 |
T |
|
| Q |
406 |
tttatttagaaaggaaagcaaagtaaattcacgagcaccatcataaacaatttacttgtataaatgtcaaattattctattattttcttccaaataaaaa |
505 |
Q |
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| T |
4774483 |
tttatttagaaaggaaagcaaagtaaattcacgagcaccatcataaacaatttacttgtataaatgtcaaattattctattattttcttccaaataaaaa |
4774384 |
T |
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| Q |
506 |
attgatataattcttcgtaagttgaatctagacact |
541 |
Q |
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| T |
4774383 |
attgatataattcttcgtaagttgaatctagacact |
4774348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 23169055 - 23169187
Alignment:
| Q |
140 |
attggagaatacttgccgttgcaaccttccccagcttcaatctgtcacgtacatgctatgaaaatatgttaaataaaatagaggaatcactttatatatt |
239 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23169055 |
attggagattacttgtcgttgcaaccttccccagcttcaatctgtcacgtacatgctatgaaaatatattaaataaaatagaggaatcactttatatatt |
23169154 |
T |
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| Q |
240 |
tgcactgaaatattttttacgtgacttacatgt |
272 |
Q |
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| T |
23169155 |
tgtagtgaaatatttgttatgtgacttacatgt |
23169187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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