View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_high_7 (Length: 489)
Name: NF6328_high_7
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 101 - 479
Target Start/End: Complemental strand, 42680644 - 42680267
Alignment:
| Q |
101 |
taaaagagaaaggctacatgaccaaatttcaatagagctaaatattttgactctaaattaacttactcaaagttttgtgacgctaaaagagaaagggtgc |
200 |
Q |
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| T |
42680644 |
taaaagagaaaggttacatgaccaaatttcaatagagctaaatattttgactctaaattaactgactcaaagttttgtgacgctaaaagagaaagggtgc |
42680545 |
T |
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| Q |
201 |
tctaaaataannnnnnngagtcaattaataaaagagtatcgaattatgtgactctaaaagtgtaattcaaaaaattagtaaggtgaccaaatttagtaag |
300 |
Q |
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| T |
42680544 |
tctaaaataattttttagagtcaattaataaaagagtatcgaattatgtgactctaaaagtgtaattcaaaaaattagtaaggtgaccaaatttagtaag |
42680445 |
T |
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| Q |
301 |
aaaaattatagattcagttaatttgttagacaattagttagataaggttggcacaataactttcataagcaagaggatttataatttcatttcacatctt |
400 |
Q |
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| T |
42680444 |
aaaaattatagattcagttaatttgttagacaattagttagataaggttggcacaataactttcataagcaagaggatttataa-ttcatttcacatctt |
42680346 |
T |
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| Q |
401 |
atcagtgaaaacaatgttccctgcaatatcaaagttcaatatcaacatcattatgcatactgtatatcttacccctttg |
479 |
Q |
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| T |
42680345 |
atcagtgaaaacaatgttccctgcaatatcaaagttcaatatcaacatcattatgcatactgtatatcttacccctttg |
42680267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 42680779 - 42680698
Alignment:
| Q |
18 |
gtacgtacatactagttcgcgatactttttgcaaattggcttgcacaaattctccactaattcgtggaaatttgtgaaccgg |
99 |
Q |
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| T |
42680779 |
gtacgtacataccagttcacgacactttttgcaaattggtttgcacaaattctccactaattcatggaaatttgtgaaccgg |
42680698 |
T |
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