View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6328_low_1 (Length: 682)

Name: NF6328_low_1
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6328_low_1
NF6328_low_1
[»] chr2 (4 HSPs)
chr2 (310-612)||(8085628-8085933)
chr2 (15-256)||(8085987-8086226)
chr2 (624-664)||(33436029-33436069)
chr2 (615-651)||(33436345-33436381)
[»] scaffold0110 (1 HSPs)
scaffold0110 (615-660)||(8783-8828)
[»] chr4 (3 HSPs)
chr4 (615-664)||(41824013-41824062)
chr4 (615-661)||(50052348-50052394)
chr4 (615-660)||(40574914-40574959)
[»] chr3 (4 HSPs)
chr3 (615-664)||(35965702-35965751)
chr3 (615-660)||(30801653-30801698)
chr3 (615-660)||(8076528-8076573)
chr3 (615-660)||(20764835-20764880)
[»] chr8 (3 HSPs)
chr8 (615-664)||(5957961-5958010)
chr8 (615-660)||(10284551-10284596)
chr8 (616-664)||(40423864-40423912)
[»] chr7 (5 HSPs)
chr7 (615-660)||(21234536-21234581)
chr7 (615-660)||(41423817-41423862)
chr7 (615-659)||(16374744-16374788)
chr7 (615-648)||(35468775-35468808)
chr7 (615-660)||(46033721-46033766)
[»] chr5 (1 HSPs)
chr5 (615-660)||(31009123-31009168)
[»] chr6 (2 HSPs)
chr6 (615-660)||(31976383-31976428)
chr6 (615-659)||(22421999-22422043)
[»] chr1 (1 HSPs)
chr1 (615-660)||(6261005-6261050)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 310 - 612
Target Start/End: Complemental strand, 8085933 - 8085628
Alignment:
Q  310 tgagataatcgttgttggacacatggttgtttctttgggttttcttgcattacactactttttattttaatatattcaatatggtactgcaattaatata 409  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8085933 tgagataatcgttgttgtacacatggttgtttctttgggttttcttgcattacactactttttattttaatatattcaatatggtactgcaattaatata 8085834  T
Q  410 tcgtaggtgatagttttatcaataaaaaacatcataatcttatattgaaaccatgaccaagttaataatcatacagtgatcttctaaaccgtgtaaatga 509  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8085833 tagtaggtgatagttttatcaataaaaaacatcataatcttatattgaaaccatgaccaagttaataatcattcagtgatcttctaaaccgtgtaaatga 8085734  T
Q  510 acgttctttttatatttgatatagtggttctttgactcaccaataatataggcgaggtctactacatag---tatcacttagactttaggtctttaaatc 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||    
T  8085733 acgttctttttatatttgatatagtggttctttgactcaccaataatataggtgaggtctactacatagtactatcacttagactttaggtctttaaatc 8085634  T
Q  607 cacaat 612  Q
    ||||||    
T  8085633 cacaat 8085628  T

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Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 8086226 - 8085987
Alignment:
Q  15 taatactcatggttttgctaaattgttaatcaccggcgattgttagagtggcgatcagtggtggttgatggtagccaactgagtggtagccaatggagat 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8086226 taatactcatggttttgctaaattgttaatcaccggcgattgctagagtggcgatcagtggtggttggtggtagccaactgagtggtagccaatggagat 8086127  T
Q  115 caaattaagtgggggtgagaggcggctagagttttggtcataata-taatcagtggtggttggaattgttgtcaatggtgatcaaagtgatggatgacga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8086126 caaattaagtgggggtgagaggcggctagagttttggtcataatagtaatcagtggtggttggaattgttgtcaatggtgatcaaagtgatggatgacga 8086027  T
Q  214 aggtgttcagataagtgattgttttcttcttgcattacactac 256  Q
    |||||||||||||||||||||||   |||||||||||||||||    
T  8086026 aggtgttcagataagtgattgtt---ttcttgcattacactac 8085987  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 664
Target Start/End: Original strand, 33436029 - 33436069
Alignment:
Q  624 catatacaccttttattcttatacacctttgtacacctcat 664  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  33436029 catagacaccttttattctcatacacccttgtacacctcat 33436069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 651
Target Start/End: Complemental strand, 33436381 - 33436345
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacct 651  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  33436381 aaaatgttacatagacaccttttattctcatacacct 33436345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 8783 - 8828
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||    
T  8783 aaaatgttacatagacaccttttattcttatacacccttgtacacc 8828  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 664
Target Start/End: Complemental strand, 41824062 - 41824013
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacctcat 664  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||    
T  41824062 aaaatgttacatagacaccatttattctcatacacctttgtacacctcat 41824013  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 50052348 - 50052394
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacct 661  Q
    ||||||||||||| ||||| |||||||  ||||||||||||||||||    
T  50052348 aaaatgttacatagacaccctttattcccatacacctttgtacacct 50052394  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 40574959 - 40574914
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  40574959 aaaatgttagatagacaccttttattctcatacacccttgtacacc 40574914  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 615 - 664
Target Start/End: Original strand, 35965702 - 35965751
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacctcat 664  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  35965702 aaaatgttacatagacaccttttattctcatacacccttgtacacctcat 35965751  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 30801653 - 30801698
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||    
T  30801653 aaaatgttacatagacaccttttattctcatacacccttgtacacc 30801698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 8076573 - 8076528
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||||| |||||| ||||||||||    
T  8076573 aaaatgttacatagacaccatttattctcatacacttttgtacacc 8076528  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 20764835 - 20764880
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||    
T  20764835 aaaatgttacatagacaccatttattctcatacacccttgtacacc 20764880  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 664
Target Start/End: Complemental strand, 5958010 - 5957961
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacctcat 664  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||||||    
T  5958010 aaaatgttacataaacaccctttattctcatacacccttgtacacctcat 5957961  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 10284551 - 10284596
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||    
T  10284551 aaaatgttacatagacaccttttattcttatacaaccttgtacacc 10284596  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 664
Target Start/End: Original strand, 40423864 - 40423912
Alignment:
Q  616 aaatgttacatatacaccttttattcttatacacctttgtacacctcat 664  Q
    ||||| |||||| |||||||||||||  ||||||| |||||||||||||    
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcat 40423912  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 21234581 - 21234536
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||    
T  21234581 aaaatgttacatagacaccttttattctcatacaccattgtacacc 21234536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 41423862 - 41423817
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||    
T  41423862 aaaatgttacataaacaccctttattctcatacacctttgtacacc 41423817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 615 - 659
Target Start/End: Original strand, 16374744 - 16374788
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacac 659  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||    
T  16374744 aaaatgttacatagacaccctttattctcatacacctttgtacac 16374788  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 648
Target Start/End: Original strand, 35468775 - 35468808
Alignment:
Q  615 aaaatgttacatatacaccttttattcttataca 648  Q
    |||||||||||||||||||||||||||| |||||    
T  35468775 aaaatgttacatatacaccttttattctcataca 35468808  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 46033721 - 46033766
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||    
T  46033721 aaaatgttacatagacaccatttattctcatacacccttgtacacc 46033766  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 31009168 - 31009123
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||    
T  31009168 aaaatgttacatagacaccctttattctcatacacctttgtacacc 31009123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 31976428 - 31976383
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||    
T  31976428 aaaatgttacatagacaccatttattctcatacacccttgtacacc 31976383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 659
Target Start/End: Original strand, 22421999 - 22422043
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacac 659  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||    
T  22421999 aaaatgttacatagacaccatttattctcatacacccttgtacac 22422043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 6261050 - 6261005
Alignment:
Q  615 aaaatgttacatatacaccttttattcttatacacctttgtacacc 660  Q
    ||||||||||||| ||||| |||||| | |||||||||||||||||    
T  6261050 aaaatgttacatacacaccatttattttcatacacctttgtacacc 6261005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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