View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_10 (Length: 430)
Name: NF6328_low_10
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 208 - 427
Target Start/End: Complemental strand, 18283530 - 18283311
Alignment:
| Q |
208 |
tatagaattgatcctaattgtagtaaatttatgataacatgcataattcacgtaaaaagctatagcaatgaaaaatgtgaaaatggaaaggatataattg |
307 |
Q |
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| T |
18283530 |
tatagaattgatcttaattgtagtaaatttatgataacatgcataattcacgtaaaaagctatagcaatgaaaaatgtgaaaatggaaaggatataattg |
18283431 |
T |
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| Q |
308 |
aagaaacaaaatcatacaatgaagattgaatttgtaatacaagttgaagaattcacaatccaaattacgttgattaaacaatatagagagatgtatacac |
407 |
Q |
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| T |
18283430 |
aagaaacaaactcatacaatgaagattgaatttgtaatacaagttgaagaattcacaatccaaattacgttgattaaacaatatagagagatgtatacac |
18283331 |
T |
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| Q |
408 |
attggaagaaaatgatgatg |
427 |
Q |
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| T |
18283330 |
attggaagaaaatgatgatg |
18283311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 18283743 - 18283550
Alignment:
| Q |
21 |
ataggttgcttggcgtccatttgtgttctccaacctctttatctttagctttaccctccccatcctacaaat---tcatatataaccaaaatattaattc |
117 |
Q |
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| T |
18283743 |
ataggttgcttggcgtccatttgtgttctccaacctctttatctttagctttaccctccccatcctacaaataattcatatataaccaaaatattaattc |
18283644 |
T |
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| Q |
118 |
ttaaattacaaaacatccaactatttgagctagcttaaccattactttaatttccatttctcatatattattgtagaagaaattccaatctata |
211 |
Q |
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| T |
18283643 |
ttaaattagaaaacatccaactatttgagctagcttaaccattactttaatttccatttctcatatattattgtagaagaaattccaatctata |
18283550 |
T |
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