View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_11 (Length: 406)
Name: NF6328_low_11
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 52077084 - 52076767
Alignment:
| Q |
16 |
caacaataatacatgttagttgagatgcaaatctcttccctattgttgttaatgttttgatgggttgaatctgaattgtaggttgttgttgttggtaggg |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
52077084 |
caacaataatacatgttagtggagatgcaaatctcttccctattgttgttaatgttttgatgggttgaatctggattttaggttgttgttgttggtaggg |
52076985 |
T |
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| Q |
116 |
atgacgaacaatggattctgatggagaataattaatggtattgttcataaaatggttttgaatttatgttagatatgcaattttgaatggatcaacaatt |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52076984 |
atgaggaacaatggattctgatggagaataattaatggtgttgttcataaaatggttttgaatttatgttagatatgcaatttcgaatggatcaacaatt |
52076885 |
T |
|
| Q |
216 |
gttctagtgatgtttatagatgaaaatttgagatttaagtgaagtattcaatcaattctagcatt-ttttggtctgactattnnnnnnnnttgggtttat |
314 |
Q |
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| T |
52076884 |
gttctagtgatgtttatagatgaaaatttgagatttaagtgaagtattcaatcaattctagcatttttttggtctgactgttaaaaaaatttgggtttat |
52076785 |
T |
|
| Q |
315 |
atgaacataatgatgaag |
332 |
Q |
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|||||||||||||||||| |
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| T |
52076784 |
atgaacataatgatgaag |
52076767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 59 - 398
Target Start/End: Complemental strand, 3615771 - 3615430
Alignment:
| Q |
59 |
tgttgttaatgttttgatgggttgaatctgaattgtaggttgttgttgttggtagggatgacgaacaatggattctgatggagaataattaatggtattg |
158 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| |
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| T |
3615771 |
tgttgttaatgttttgatgggttgaatctgaattttaggttgttgttgttggtagggatgagaaacaatgggttctgatggagaataattaatggtgttg |
3615672 |
T |
|
| Q |
159 |
ttcataaaatggttttgaatttatgttagatatgcaattttgaatggatcaacaattgttctagtgatgtttatagatgaaaatttgagatttaagtgaa |
258 |
Q |
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| T |
3615671 |
ttcataaaatggttttgaatttttgttagatatgcaatttcgaatggatctgcagttgttctagtgatgtttatagatgaaaatttgagatttaagcgaa |
3615572 |
T |
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| Q |
259 |
gtattcaatcaattctagcatt--ttttggtctgactattnnnnnnnnttgggtttatatgaacataatgatgaagttgatgaagatcaagaagaggaag |
356 |
Q |
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| T |
3615571 |
gtattcaatcaattctagcattttttttggtctgactgttaaaaaaatctgggtttatatgaacataatgatgaagatgataaagatcaagaagaggaag |
3615472 |
T |
|
| Q |
357 |
attgaaggatatgaataaatgtgaaaaagttaggtgatgatg |
398 |
Q |
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| T |
3615471 |
attgaaggagatgaataaaggtgaaaaagttaggtgatgatg |
3615430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 52076770 - 52076725
Alignment:
| Q |
353 |
gaagattgaaggatatgaataaatgtgaaaaagttaggtgatgatg |
398 |
Q |
| |
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| T |
52076770 |
gaagattgaaggagatgaataaatgtgaaaaagttaggtgatgatg |
52076725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 48494061 - 48494107
Alignment:
| Q |
239 |
aaatttgagatttaagtgaagtattcaatcaattctagcattttttg |
285 |
Q |
| |
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| T |
48494061 |
aaatttgagatttaagtgaaggattcgatcaattctagcattttttg |
48494107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 3615802 - 3615768
Alignment:
| Q |
37 |
gagatgcaaatctcttccctattgttgttaatgtt |
71 |
Q |
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| T |
3615802 |
gagatgcaaatctcttccctattgttgttaatgtt |
3615768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 398
Target Start/End: Original strand, 48494129 - 48494218
Alignment:
| Q |
305 |
ttgggtttatatgaacataatgatgaagttgatgaagatcaagaagaggaagattgaaggatatgaataaatgtgaaaaagttaggtgatgatg |
398 |
Q |
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|||||||||| |||| | |||| ||||| |||||||||||||||| ||||||||||| ||||||||| || |||| ||||||| ||||| |
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| T |
48494129 |
ttgggtttatgtgaataaaatgttgaagatgatgaagatcaagaa----tagattgaaggagatgaataaaagtcaaaagattaggtgttgatg |
48494218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 16757054 - 16757402
Alignment:
| Q |
16 |
caacaataatacatgttagttgagatgcaaatctcttccctattgttgttaatgttttgatgggttgaatctgaattgtaggttgttgttgttggtaggg |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| |
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| T |
16757054 |
caacaataatacatgttagtggagatgtaaatctcttccttattgttgttaatgttttgatgggttgaatctggattttaggtggttg---ttggtaggg |
16757150 |
T |
|
| Q |
116 |
atgacgaacaatggattctgatggagaataattaatggtattgttcataaaatggttttgaatttatgttagatatgcaattttgaatggatcaacaatt |
215 |
Q |
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|||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
16757151 |
atgaggaacaatgggttttgatggagaataattaatggtgttgttcataaaatggttttgaatttatgttagatatgcaatttcgaatggatctgcaatt |
16757250 |
T |
|
| Q |
216 |
gttctagtgatgtttatagatgaaaatttgagatttaagtgaagtattcaatcaattctagca-ttttttggtctgactattnnnnnnnnttgggtttat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
16757251 |
gttctagtgatgtttatagatgaaaatttgagatttaagtgaagtattcaatcaattctagcatttttttggtctgactgttaaaaaaatcagggtttat |
16757350 |
T |
|
| Q |
315 |
atgaacataatgatgaagttgatgaagatcaagaagagg-aagattgaagga |
365 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
16757351 |
gtgaacataatgatgaagatgatgaagatcaagaagaggaaagattgaagga |
16757402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 44553550 - 44553504
Alignment:
| Q |
239 |
aaatttgagatttaagtgaagtattcaatcaattctagcattttttg |
285 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44553550 |
aaatttgagatttaagtgaaggattcaatcaattctagcattttttg |
44553504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 42368135 - 42368195
Alignment:
| Q |
305 |
ttgggtttatatgaacataatgatgaagttgatgaagatcaagaagaggaagattgaagga |
365 |
Q |
| |
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|||||||||||||||||||||| | ||| ||||||||||||||| || ||| ||||||||| |
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| T |
42368135 |
ttgggtttatatgaacataatgtttaagatgatgaagatcaagaggaagaatattgaagga |
42368195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 17029950 - 17029909
Alignment:
| Q |
306 |
tgggtttatatgaacataatgatgaagttgatgaagatcaag |
347 |
Q |
| |
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||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
17029950 |
tgggtttatatgaacatgatggtgaagatgatgaagatcaag |
17029909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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