View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_12 (Length: 389)
Name: NF6328_low_12
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 33 - 383
Target Start/End: Complemental strand, 56379207 - 56378866
Alignment:
| Q |
33 |
taatagtaatagtaatagtaatacaaacaaatcggcctctcagagtccatgcatgatgaattgttaatccctgaggaggagaggagagaaacatcactca |
132 |
Q |
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| T |
56379207 |
taatagtaatagtaatagtaatacgaacaaatcggcctc--agagtccatgcatgatgaattgttaatccctgaggag---aggagagaaacatgactca |
56379113 |
T |
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| Q |
133 |
actcaaaacaagtacgtaattaattaattaatatgcaaatgcaatattcctaaactaattaaattaccacaacaagtacagacggatggatttataaatg |
232 |
Q |
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| T |
56379112 |
actcaaaacaagtacgtaattaattaat----atgcaaatgcaatattcctaaactaattaaattaccacaacaagtacagacggatggatttataaatg |
56379017 |
T |
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| Q |
233 |
caagagaaagacttaaattaattaagaagttttatggagttgggagatgattagcactagcactagcagtagtatgttcatattgaagttgttttttggc |
332 |
Q |
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| T |
56379016 |
caagagaaagacttaaattaattaagaagttttatggagttgggagatgattagcattagcactagcagtagtatgttcatgttgaagttgttttttggc |
56378917 |
T |
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| Q |
333 |
gagattgtgtttattgttatgcatccaaacttttagcactcttcttctcac |
383 |
Q |
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| T |
56378916 |
gagattgtgtttattgttatgcatccaaacttttagcactcttcttttcac |
56378866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 56379246 - 56379211
Alignment:
| Q |
18 |
aatgtaattgtattctaatagtaatagtaatagtaa |
53 |
Q |
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| T |
56379246 |
aatgtaatagtattctaatagtaatagtaatagtaa |
56379211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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