View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_13 (Length: 387)
Name: NF6328_low_13
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 36439498 - 36439673
Alignment:
| Q |
3 |
agtttaaggttatttgtttgatgttgttgatgtttataccgtaggttatttttacacgaaaaagagcacaatagtattcaaatgtttgcattgtatgtcg |
102 |
Q |
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| T |
36439498 |
agtttaaggttatttgtttgatgttgttgatgtttataccgtaagttatttttacacgaaaaagagcacaatagtattcaaatgtttgcattgtatgtcg |
36439597 |
T |
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| Q |
103 |
ccattcttacgtaaattatgtaccnnnnnnnnnnccaagacttattacaccactaatgtaggaatggacgaggatttg |
180 |
Q |
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| T |
36439598 |
ccattcttacgtaaattatgtac--ttttttttttcaagacttattacaccactaatgtaggaatggacgaggatttg |
36439673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 36439726 - 36439848
Alignment:
| Q |
233 |
gtcgaattggaaaatagagaaatatcaatatgcataataactaattaagcaaagtcagcatcataaggaatgttaatagaaggcaaccaagtgctaccct |
332 |
Q |
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| T |
36439726 |
gtcgaattggaaaatagagaaatatcaatatgcataataactaattaagcaaagtcagcatcataaggaatgttaatagaaggcaa-caagtgctaccct |
36439824 |
T |
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| Q |
333 |
gaagcaataattgaatagtgaatt |
356 |
Q |
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| T |
36439825 |
gaggccataattcaatagtgaatt |
36439848 |
T |
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