View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_17 (Length: 366)
Name: NF6328_low_17
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_17 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 6359425 - 6359791
Alignment:
| Q |
1 |
ccagtcactcaaattcacgagtaaaatttatcctgcctggtgtattcatatgaacactttgttccttgtatatgacctgaccggcttcaatgacacaaag |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359425 |
ccagtcactcaaattcacaagtaaaatttatcctgcctggtgtattcatataaacgctttgttccttgtatatgacctgaccggcttcaatgacacaaag |
6359524 |
T |
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| Q |
101 |
gcttgtcccatcaaaactgatcaaaatttcaattcttagattaggcaagatcaacttatattcaactaatattccaagctctttctagcgaacatttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359525 |
gcttgtcccatcaaaactgatcaaaatttcaattcttagattaggcaagatcaacttatattcaactaatattccaagctctttctagcgaacatttttg |
6359624 |
T |
|
| Q |
201 |
gaatgacctcccatgcttgaagggatgttttcacattgcctaaggcagtgcaatgataatgctaggatcgactaaattgaaaattgcatgcaagaaaagt |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359625 |
gaatgacctcccatgcttgatgggatgttttcacattgcctaaggcagtgcaatgataatgctaggatcgactaaattgaaaattgcatgcaagaaaagt |
6359724 |
T |
|
| Q |
301 |
tgatcttgcctaattctgttgtgaattcggtcaatttcaaacttcacatcaatac-aactatgatgt |
366 |
Q |
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| T |
6359725 |
tgatcttgcctaattctgttgtgaattcggtcaattccaaacttcacatcaatacaaactatgatgt |
6359791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 6360777 - 6360732
Alignment:
| Q |
87 |
tcaatgacacaaaggcttgtcccatcaaaactgatcaaaatttcaa |
132 |
Q |
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| T |
6360777 |
tcaatggcacaaaggcgtgttccatcaaaactgatcaaaatttcaa |
6360732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 45187343 - 45187477
Alignment:
| Q |
28 |
ttatcctgcctggtgtattcatatgaacactttgttccttgtatatgacctgaccggcttcaatga---cacaaaggcttgtcccatcaaaactgatcaa |
124 |
Q |
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|||||| |||||| || |||| ||||| |||||||| ||| ||||||||| |||| ||||| ||| |||||||| ||| || ||||||| |||| | |
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| T |
45187343 |
ttatccagcctggcgtgttcagatgaatgctttgttcattggatatgaccttaccgacttcattgatggcacaaaggtgtgttccgtcaaaacagatcca |
45187442 |
T |
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| Q |
125 |
aatttcaattcttagattaggcaagatcaacttat |
159 |
Q |
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|||||||| | || ||| ||||||||||||||||| |
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| T |
45187443 |
aatttcaactattggatcaggcaagatcaacttat |
45187477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 45187576 - 45187461
Alignment:
| Q |
191 |
aacatttttggaatgacctcccatgcttgaagggatgttttcacattgcctaaggcagtgcaatgataatgctaggatcgactaaattgaaaattgcatg |
290 |
Q |
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||||||||| | | ||| ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||| ||| || ||| ||| ||||| |
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| T |
45187576 |
aacattttttggaggacatcccatgcttgctgggatatttgaacattgcctaaggtag-----tgataatgctaggatcaactgaagtgataatagcatg |
45187482 |
T |
|
| Q |
291 |
caagaaaagttgatcttgcct |
311 |
Q |
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||||| ||||||||||||||| |
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| T |
45187481 |
caagataagttgatcttgcct |
45187461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 27416791 - 27416828
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaata |
354 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
27416791 |
tgttgtgaattcggtcaattccaaacttcacatcaata |
27416828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 8665787 - 8665751
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
8665787 |
tgttgtgaattcggtcaatttcaaacttcacttcaat |
8665751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 35662816 - 35662780
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
35662816 |
tgttgtgaattcggtcaattccaaacttcacatcaat |
35662780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 54881679 - 54881643
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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| T |
54881679 |
tgttgtgaattcggtcaattccaaacttcacatcaat |
54881643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 8648526 - 8648490
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||| |
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| T |
8648526 |
tgttgtgaattcggtcaattacaaacttcacttcaat |
8648490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 55085235 - 55085271
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
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|
||||||||||| |||||||| |||||||||||||||| |
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| T |
55085235 |
tgttgtgaatttggtcaattccaaacttcacatcaat |
55085271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 46173739 - 46173702
Alignment:
| Q |
316 |
ctgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
46173739 |
ctgttgtgaattcggtcaattccaaacttcacatcaat |
46173702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 10869 - 10833
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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| T |
10869 |
tgttgtgaattcggtcaatttcaaacctcacatcaat |
10833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 3772571 - 3772535
Alignment:
| Q |
317 |
tgttgtgaattcggtcaatttcaaacttcacatcaat |
353 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||| |
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| T |
3772571 |
tgttgtgaattcggtcaattccaaacctcacatcaat |
3772535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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