View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6328_low_2 (Length: 615)
Name: NF6328_low_2
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 114 - 387
Target Start/End: Complemental strand, 52594606 - 52594334
Alignment:
| Q |
114 |
ttccttgaatttgcatgttagttacaatggaaacttgcggcatatgcatgttgtttggtaacaaatatttgaccttgaattaacactattttaacgtctc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52594606 |
ttccttgaatttgcatgttagttacaatggaaacttgcggcatatgcatgt-gtttggtaacaaatatttgaccttgaattaacactattttaacgtctc |
52594508 |
T |
|
| Q |
214 |
aaccaatatacccaacaaaagctaaatttgaggagtttataagtannnnnnnnnnnngatagggagcctttttgatacctcttatcattttccagttcga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
52594507 |
aaccaatatacccaacaaaagctaaatttgaggagcttataagtattttttatttttgatagggagcctttttgatacctcttatcattttcaaggacga |
52594408 |
T |
|
| Q |
314 |
aagtggctgtttagtgtttacttgtggtttaagttaagtttgaaagttacaatacaagcgtcggttttgtttag |
387 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
52594407 |
aagtggctgtttagtgtttacttgaggtttaagttaagtttcaaagtaacaatacaagcgtcggttttgtttag |
52594334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 446 - 600
Target Start/End: Complemental strand, 52594283 - 52594127
Alignment:
| Q |
446 |
gagaggtcccacccaccattggaatgaatagaaaatgtcatgaagagtagattgtgtatggatgagcacataacctgctgctggtagtataagggaacga |
545 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52594283 |
gagaggtcccacccaccattggaatggatagaaaatgtcatgaagagtagattgtgtatggatgagcacataacctgctgctggtagtataagggaacga |
52594184 |
T |
|
| Q |
546 |
acgtagtcatttgcagttgcgatacaaaacaggaaaccgtctga--cgcgtgaattt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52594183 |
acgtagtcatttgcagttgcgatacaaaacaggaaaccgtctgactcgcgtgaattt |
52594127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University