View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_20 (Length: 348)
Name: NF6328_low_20
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 143 - 332
Target Start/End: Original strand, 21113529 - 21113718
Alignment:
| Q |
143 |
atggtagtctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacataataatcaacagattc |
242 |
Q |
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| T |
21113529 |
atggtagtctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacataataatcaacagattc |
21113628 |
T |
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| Q |
243 |
caaaaacatcagaatttgaaaagcttgtaagaagctttaacttatccccaaaggatccagttaatcttatacatggcaatcagtcctttg |
332 |
Q |
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| T |
21113629 |
aaaaaacatcagcatttgaaaagcttgtaagaagctttaacttatccccaaaggatccagttaatctaatacatggcaatcagtcctttg |
21113718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 21123301 - 21123367
Alignment:
| Q |
150 |
tctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcg |
216 |
Q |
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| T |
21123301 |
tctccaaaacctctttgcctctttttttgttcttcattttattttctgtctcatatgcaacttctcg |
21123367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 21143221 - 21143297
Alignment:
| Q |
150 |
tctccaaaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacat |
226 |
Q |
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| T |
21143221 |
tctctaaaacctctctatctcttttgttattgttcgttttgttttcttcttcatacgcaacttctcgcatcacacat |
21143297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21113387 - 21113422
Alignment:
| Q |
1 |
aatccaaattgaatgctcgtggacatatcatgacat |
36 |
Q |
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| T |
21113387 |
aatccaaattgaatgctcgtggacatatcatgacat |
21113422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 21149044 - 21149114
Alignment:
| Q |
156 |
aaacctctatgtctcttttgttgttgttcattttattttcttcctcatatgcaacttctcgcaccacacat |
226 |
Q |
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| T |
21149044 |
aaacctccctgtctgttttgctattgttcattttattttcttccttgtatgcaacttcacgcatcacacat |
21149114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 21143345 - 21143393
Alignment:
| Q |
259 |
tgaaaagcttgtaagaagctttaacttatccccaaaggatccagttaat |
307 |
Q |
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| T |
21143345 |
tgaaaagcttataaaaagctttaacttattgccaaaggatccagttaat |
21143393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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