View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6328_low_23 (Length: 330)

Name: NF6328_low_23
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6328_low_23
NF6328_low_23
[»] chr7 (16 HSPs)
chr7 (3-315)||(46528786-46529095)
chr7 (92-201)||(41958272-41958381)
chr7 (92-202)||(1804473-1804584)
chr7 (92-184)||(11409283-11409375)
chr7 (3-69)||(41958180-41958246)
chr7 (92-184)||(45414814-45414905)
chr7 (92-169)||(17733510-17733586)
chr7 (154-199)||(17733372-17733417)
chr7 (3-47)||(1804620-1804664)
chr7 (152-199)||(31593067-31593114)
chr7 (153-199)||(3939084-3939130)
chr7 (3-62)||(3938921-3938980)
chr7 (92-138)||(13952930-13952976)
chr7 (262-315)||(1804398-1804451)
chr7 (92-149)||(31592903-31592960)
chr7 (25-65)||(31592835-31592875)
[»] chr5 (10 HSPs)
chr5 (3-240)||(9041767-9042005)
chr5 (92-201)||(19871020-19871129)
chr5 (123-202)||(23062956-23063035)
chr5 (92-149)||(42449470-42449527)
chr5 (152-199)||(10826366-10826413)
chr5 (15-66)||(19870942-19870993)
chr5 (262-305)||(23063057-23063100)
chr5 (153-194)||(42449334-42449375)
chr5 (25-69)||(10826600-10826644)
chr5 (25-69)||(42449554-42449598)
[»] chr3 (16 HSPs)
chr3 (3-240)||(48161952-48162190)
chr3 (92-315)||(18945525-18945744)
chr3 (92-240)||(45032015-45032163)
chr3 (3-201)||(183222-183420)
chr3 (92-199)||(55147116-55147223)
chr3 (92-199)||(30716429-30716536)
chr3 (92-184)||(4950340-4950431)
chr3 (92-184)||(53561925-53562017)
chr3 (3-49)||(18946088-18946134)
chr3 (11-66)||(30716348-30716403)
chr3 (11-66)||(55147034-55147089)
chr3 (152-199)||(18895856-18895903)
chr3 (25-69)||(18895636-18895680)
chr3 (103-149)||(7833810-7833856)
chr3 (262-315)||(183146-183199)
chr3 (41-69)||(18945770-18945798)
[»] chr6 (9 HSPs)
chr6 (92-201)||(5614376-5614485)
chr6 (3-197)||(1259476-1259671)
chr6 (106-202)||(19273111-19273206)
chr6 (3-62)||(19273255-19273314)
chr6 (11-66)||(5614292-5614347)
chr6 (152-199)||(7810958-7811005)
chr6 (162-191)||(1259439-1259468)
chr6 (262-295)||(19273056-19273089)
chr6 (262-290)||(5614508-5614536)
[»] chr4 (11 HSPs)
chr4 (92-201)||(31302816-31302926)
chr4 (92-202)||(39390305-39390414)
chr4 (92-184)||(12027776-12027867)
chr4 (152-199)||(54603503-54603550)
chr4 (264-305)||(31302951-31302992)
chr4 (92-149)||(54603654-54603711)
chr4 (92-169)||(55740891-55740968)
chr4 (25-69)||(54603739-54603783)
chr4 (11-58)||(39390449-39390496)
chr4 (3-66)||(55740995-55741058)
chr4 (262-315)||(39390230-39390283)
[»] chr8 (11 HSPs)
chr8 (92-201)||(8319013-8319122)
chr8 (152-199)||(20494848-20494895)
chr8 (153-199)||(44118735-44118781)
chr8 (92-149)||(20494993-20495050)
chr8 (92-149)||(44118877-44118934)
chr8 (14-66)||(8319150-8319202)
chr8 (3-71)||(23718246-23718314)
chr8 (153-199)||(23878272-23878318)
chr8 (262-315)||(8318937-8318990)
chr8 (25-69)||(20495074-20495118)
chr8 (126-182)||(42098505-42098560)
[»] chr2 (12 HSPs)
chr2 (123-201)||(4172090-4172168)
chr2 (93-201)||(40614147-40614251)
chr2 (103-193)||(26171939-26172029)
chr2 (106-184)||(34457519-34457596)
chr2 (3-169)||(29899575-29899729)
chr2 (5-66)||(40614281-40614342)
chr2 (92-184)||(21831593-21831689)
chr2 (3-69)||(21831499-21831565)
chr2 (262-315)||(40614071-40614124)
chr2 (92-169)||(31508893-31508971)
chr2 (262-305)||(4172191-4172234)
chr2 (25-69)||(31508996-31509040)
[»] chr1 (14 HSPs)
chr1 (123-201)||(42057871-42057949)
chr1 (92-184)||(46200603-46200694)
chr1 (92-182)||(13706656-13706745)
chr1 (153-199)||(42464661-42464707)
chr1 (92-169)||(18240009-18240082)
chr1 (151-199)||(18240164-18240212)
chr1 (152-199)||(27108741-27108788)
chr1 (152-199)||(31386036-31386083)
chr1 (92-149)||(15292251-15292308)
chr1 (92-149)||(42058097-42058154)
chr1 (92-149)||(42464797-42464854)
chr1 (25-69)||(18239941-18239985)
chr1 (25-69)||(42464878-42464922)
chr1 (31-69)||(31385817-31385855)
[»] scaffold1813 (1 HSPs)
scaffold1813 (92-178)||(302-387)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-61)||(140467-140525)
[»] scaffold0916 (2 HSPs)
scaffold0916 (92-169)||(786-864)
scaffold0916 (3-69)||(692-758)
[»] scaffold0251 (2 HSPs)
scaffold0251 (152-199)||(1362-1409)
scaffold0251 (25-71)||(1594-1640)
[»] scaffold0184 (2 HSPs)
scaffold0184 (152-199)||(27960-28007)
scaffold0184 (25-69)||(28188-28232)
[»] scaffold0078 (2 HSPs)
scaffold0078 (152-199)||(44837-44884)
scaffold0078 (25-69)||(44612-44656)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 3 - 315
Target Start/End: Complemental strand, 46529095 - 46528786
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttacnnnnnnnnnnnnnnnnnnnncaaatatcttc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||    
T  46529095 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttactttttttgtgtaattattttcaaatatcttc 46528996  T
Q  103 aattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46528995 aattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatgt 46528896  T
Q  203 ggtatattgtaagcttggattctaagtgtgaatttgtannnnnnnnnnnnnnnngaaggagtgtggatttgtatgaatgcctaagtttcattttatatat 302  Q
    |||||||| |||||||||||||||||||||||||||||                |||||||||||||||||||||||||| ||||||||||||| |||||    
T  46528895 ggtatattataagcttggattctaagtgtgaatttgta---tttttttttttttgaaggagtgtggatttgtatgaatgcttaagtttcattttttatat 46528799  T
Q  303 gttgcatattact 315  Q
    ||| ||| |||||    
T  46528798 gttacatgttact 46528786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 41958272 - 41958381
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958272 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 41958371  T
Q  192 tatataaatg 201  Q
    ||||||||||    
T  41958372 tatataaatg 41958381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 1804584 - 1804473
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggat-ttttaaattttttggcaagtttgaagaatgacataatgtggtatg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |    
T  1804584 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttttaaattttttggcaagtttgaagaataatataatgtggtacg 1804485  T
Q  191 ttatataaatgt 202  Q
    ||||||||||||    
T  1804484 ttatataaatgt 1804473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 11409375 - 11409283
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || ||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||||||| |||| |||||||||    
T  11409375 caaatatgttaaattttataaagtatatatgttataaggattctaagcttggatttttactttttttggcaagtttgatgaattacataatgt 11409283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 41958180 - 41958246
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  41958180 actaattatgctcctaatttagaatgcacataagttgtttgataaaatgcataagtgagtaaatctt 41958246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 45414814 - 45414905
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || |||||||||| ||| ||||||||||||| ||||||| ||||||||| | |||||||||||||||| || |||||||||||||    
T  45414814 caaatatgttaaattttataatgtacatatgttataatttttataaggttggattttgacattttttggcaagttt-aaaaatgacataatgt 45414905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 17733586 - 17733510
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttga 169  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| |||||| | |||||||||||||||||    
T  17733586 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcattttt-atttttttggcaagtttga 17733510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 17733417 - 17733372
Alignment:
Q  154 tttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  17733417 tttttggcaagtttgatgaatgacataatgtggtatgttacataaa 17733372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 1804664 - 1804620
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataa 47  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  1804664 actaattatgctcctaatttagaatgcacataaagtgtttgataa 1804620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 31593067 - 31593114
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||    
T  31593067 attttttggcaagtttgatgaatgacataatgtggtatcttacataaa 31593114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 3939084 - 3939130
Alignment:
Q  153 ttttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||||    
T  3939084 ttttttagcaagtttgatgaatgacataatgtggtatgttacataaa 3939130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 3938921 - 3938980
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgaga 62  Q
    ||||||| ||||  ||||||||||||| | ||||||||||||| |||||| |||||||||    
T  3938921 actaattgtgctagtaatttagaatgcacttaaggtgtttgatgaaatgcctaagtgaga 3938980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 13952976 - 13952930
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataag 138  Q
    ||||||| ||||||||||||| |||| ||||||||||| ||||||||    
T  13952976 caaatatgttcaattttataatgtatgtatgttataatgattataag 13952930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 1804451 - 1804398
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgttgcatattact 315  Q
    ||||||||||||||||||||||||||||| ||| |  ||||||| ||| |||||    
T  1804451 agtgtggatttgtatgaatgcctaagtttaattattgatatgttacatgttact 1804398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 31592903 - 31592960
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| |||||||| |||| |||| ||||||||||| |||||||| ||| ||||||    
T  31592903 caaatatgttcaatttgataatgtatgtatgttataatgattataagtttgcattttt 31592960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 31592835 - 31592875
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaa 65  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  31592835 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaa 31592875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 9042005 - 9041767
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttacnnnnnnnnnnnnnnnnnnnn-caaatatctt 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |                     ||||||||||    
T  9042005 actaattatgctcctaatttagaatgcacataaggtgtttgataaaatgcataagtgaggaaatcttgctttttttgtgtaattttttttcaaatatctt 9041906  T
Q  102 caattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9041905 caattttataaagtatatatgttataattattataagcttggattttttaattttttggcaagtttgaagaatgacataatgtggtatgtaatataaatg 9041806  T
Q  202 tggtatattgtaagcttggattctaagtgtgaatttgta 240  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  9041805 tggtatattataagcttggattctaagtgtggatttgta 9041767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 19871020 - 19871129
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    |||||||  |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19871020 caaatatgatcaattttataatgtatatatgttgtaattattataaacttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 19871119  T
Q  192 tatataaatg 201  Q
    ||||||||||    
T  19871120 tatataaatg 19871129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 23062956 - 23063035
Alignment:
Q  123 ttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23062956 ttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatgt 23063035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 42449527 - 42449470
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||| ||| ||||||    
T  42449527 caaatatgttcaattttataatgtatatatgttataatgattataagtttgcattttt 42449470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 10826413 - 10826366
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  10826413 attttttggcaagtttgaggaatgacgtaatgtggtatgttacataaa 10826366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 19870942 - 19870993
Alignment:
Q  15 cctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    |||| |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  19870942 cctattttagaatgcacataaggtgtttgatgaaatgcctaagtgagaaaat 19870993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 23063057 - 23063100
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgtt 305  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  23063057 agtgtggatttgtatgaatgcctaagtttcatttttgatatgtt 23063100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 42449375 - 42449334
Alignment:
Q  153 ttttttggcaagtttgaagaatgacataatgtggtatgttat 194  Q
    ||||| ||||||||||| |||||||||||||||| |||||||    
T  42449375 tttttcggcaagtttgatgaatgacataatgtggcatgttat 42449334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 10826644 - 10826600
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||| ||||||||    
T  10826644 aatgcacataaggtgtttgatgaaatgcctaagtgataaaatctt 10826600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 42449598 - 42449554
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| |||||||||||||||  ||||| ||||||||||||||||    
T  42449598 aatgcacataaggtgtttgatggaatgcctaagtgagaaaatctt 42449554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 48161952 - 48162190
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttacnnnnnnnnnnnnnnnnnnnn-caaatatctt 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |                     ||||||||||    
T  48161952 actaattatgctcctaatttagaatgcacataaggtgtttgataaaatgcataagtgaggatatcttgccttttttgtgtaattttttttcaaatatctt 48162051  T
Q  102 caattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48162052 caattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatg 48162151  T
Q  202 tggtatattgtaagcttggattctaagtgtgaatttgta 240  Q
    ||||||||| |||||||||||| |||||||| |||||||    
T  48162152 tggtatattataagcttggattttaagtgtggatttgta 48162190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 92 - 315
Target Start/End: Complemental strand, 18945744 - 18945525
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18945744 caaatatcttcaattttataaagtatatacgttataattattataagcttaaatttttaaattttttcgcaagtttgaagaatgacataatgtggtatgt 18945645  T
Q  192 tatataaatgtggtatattgtaagcttggattctaagtgtgaatttgtannnnnnnnnnnnnnnngaaggagtgtggatttgtatgaatgcctaagtttc 291  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||                |||||||||||||||||||||||||||||||||||    
T  18945644 tatataaatgtggtatattataagcttggattctaagtgtggatttgta----ttttttttttttgaaggagtgtggatttgtatgaatgcctaagtttc 18945549  T
Q  292 attttatatatgttgcatattact 315  Q
     |||| |||||||| ||| |||||    
T  18945548 tttttttatatgttacatgttact 18945525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 45032015 - 45032163
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45032015 caaatatcttcaattttataaagtatatatgttataattattataagcttcgatttttaatttttttggcaagtttgaagaatgacataatgtggtatgt 45032114  T
Q  192 tatataaatgtggtatattgtaagcttggattctaagtgtgaatttgta 240  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  45032115 tatataaatgtggtatattataagcttgaattctaagtgtggatttgta 45032163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 183420 - 183222
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttacnnnnnnnnnnnnnnnnnnnncaaatatcttc 102  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||                       ||||||||||    
T  183420 actaattatgctcttaatttagaatgcacataaggtgtttgataaaatgcataagtgaggaaatcttgtttttttgtgtaattattttttaaatatcttc 183321  T
Q  103 aattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  183320 aattttataaagtatatatgttataattattataagcttggatttttaaattttttgacaagtttgaagaatgacataatgtggtatgttatataaatg 183222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 55147116 - 55147223
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||| ||||||||||||| ||||||||| | |||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  55147116 caaatatgttcaattttataatgtatatatgctgtaattattatagacttggatttataaattttttggcaagtttgatgaatgacataatgtggtatgt 55147215  T
Q  192 tatataaa 199  Q
    || |||||    
T  55147216 tacataaa 55147223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 30716429 - 30716536
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||| ||||||||||||| ||||||||| | |||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||| |||||| |    
T  30716429 caaatatgttcaattttataatgtatatatgctgtaattattatagacttggatttataaattttttggcaagtttgatgaatgacataatatggtatat 30716528  T
Q  192 tatataaa 199  Q
    || |||||    
T  30716529 tacataaa 30716536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 4950431 - 4950340
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || |||||||||| ||||||||||||||| ||||||||| ||||||||| | ||||||||| |||||| ||||||||||||||||    
T  4950431 caaatatgttaaattttataatgtatatatgttataaatattataaggttggattttgacattttttggaaagttt-aagaatgacataatgt 4950340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 53562017 - 53561925
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttta-aattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||| ||||||||| | | ||||||||||||||| ||||||||||||||||    
T  53562017 caaatatgttaaatcttataatgtatatatgttataattattataaggttggattttgacatttttttggcaagttt-aagaatgacataatgt 53561925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 18946134 - 18946088
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaa 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18946134 actaattatgctcctaatttagaatgctcataaggtgtttgataaaa 18946088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 30716348 - 30716403
Alignment:
Q  11 tgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    ||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||    
T  30716348 tgctcctaatttagagtgcacataaggtgtttgatgaaatgcctaagtgagaaaat 30716403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 55147034 - 55147089
Alignment:
Q  11 tgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    |||||||||||||||| || ||||||||||||||| |||||| |||||||||||||    
T  55147034 tgctcctaatttagaacgcacataaggtgtttgatgaaatgcctaagtgagaaaat 55147089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 18895856 - 18895903
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| |||||||||||||||| |||||| |||||    
T  18895856 attttttggcaagtttgatgaatgacataatgtggaatgttacataaa 18895903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 18895636 - 18895680
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  18895636 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaatctt 18895680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 7833810 - 7833856
Alignment:
Q  103 aattttataaagtatatatgttataattattataagcttggattttt 149  Q
    |||||||||| |||||||||||||||| |||||||  ||||||||||    
T  7833810 aattttataatgtatatatgttataatgattataaatttggattttt 7833856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 183199 - 183146
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgttgcatattact 315  Q
    ||||||||||| ||||||||||||||||| |||||  ||||||| ||| |||||    
T  183199 agtgtggatttatatgaatgcctaagttttatttttgatatgttacatgttact 183146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 18945798 - 18945770
Alignment:
Q  41 ttgataaaatgcataagtgagaaaatctt 69  Q
    |||||||||||||||||||||||||||||    
T  18945798 ttgataaaatgcataagtgagaaaatctt 18945770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 5614376 - 5614485
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5614376 caaatatgttcaattttataatgtatatatgttgtaattattataaacttggatttttaatttttttggcaagtttgaagaatgaaataatgtggtatgt 5614475  T
Q  192 tatataaatg 201  Q
    ||||||||||    
T  5614476 tatataaatg 5614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 1259671 - 1259476
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttacnnnnnnnnnnnnnnnnnnnn-caaatatctt 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| || |                     ||||||| ||    
T  1259671 actaattatgctcctaatttagaatgcacataaggtgtttgatgaaatgcgtaagtgagaaaatgttgctttttttgtgtaatttttgttcaaatatgtt 1259572  T
Q  102 caattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatata 197  Q
     |||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  1259571 taattttataatgtatatatgttataattattataagcttgaatttttacattttttgccaagtttgaagaataacataatgtggtatgttatata 1259476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 19273206 - 19273111
Alignment:
Q  106 tttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatgt 202  Q
    ||||||| ||||||| |||||||| |||||||| |||||||||    |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  19273206 tttataatgtatataagttataatgattataagtttggattttgct-ttttttggcaagtttgaagaatgaaataatgtggtatgttacataaatgt 19273111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 19273314 - 19273255
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgaga 62  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  19273314 actaattgtgctcctaatttagaatgcacataaggtgtttgatgaaatgcctaagtgaga 19273255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 5614292 - 5614347
Alignment:
Q  11 tgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    ||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||    
T  5614292 tgctcctaatttataatgcacataaggtgtttgatgaaatgcttaagtgagaaaat 5614347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 7811005 - 7810958
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  7811005 attttttggcaagtttgatgaacgacataatgtggtatgttacataaa 7810958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 1259468 - 1259439
Alignment:
Q  162 aagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||||||||||||||||||||||||||    
T  1259468 aagtttgaagaatgacataatgtggtatgt 1259439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 19273089 - 19273056
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattt 295  Q
    ||||||||||||||||||||||||||||| ||||    
T  19273089 agtgtggatttgtatgaatgcctaagtttaattt 19273056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 5614508 - 5614536
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagttt 290  Q
    |||||||||||||||||||||||||||||    
T  5614508 agtgtggatttgtatgaatgcctaagttt 5614536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 31302816 - 31302926
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaat-tttttggcaagtttgaagaatgacataatgtggtatg 190  Q
    ||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  31302816 caaatatgttaaatcttataatgtatatatgttataattattataagcttggatttttaaaaatttttggcaagtttgaagaatgacataatgtggtatg 31302915  T
Q  191 ttatataaatg 201  Q
    |||||||||||    
T  31302916 ttatataaatg 31302926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 39390414 - 39390305
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||| |    
T  39390414 caaatatgttcaattttataatgtatatatgttctaattattataaacttgaatttt-aaattttttggcaagttttaagaatgacataatgtggtattt 39390316  T
Q  192 tatataaatgt 202  Q
    |||||||||||    
T  39390315 tatataaatgt 39390305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 12027867 - 12027776
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || ||| |||||| |||||||| |||||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||    
T  12027867 caaatatgttaaatcttataatgtatatatattataattattataaggttggattttgacattttttggcaagttt-aagaatgacataatgt 12027776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 54603550 - 54603503
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  54603550 attttttggcaagtttgatgaatgacataatgtggtatgttacataaa 54603503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 31302951 - 31302992
Alignment:
Q  264 tgtggatttgtatgaatgcctaagtttcattttatatatgtt 305  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  31302951 tgtggatttgtatgaatgcctaagtttcatttttgatatgtt 31302992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 54603711 - 54603654
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    
T  54603711 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcattttt 54603654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 55740968 - 55740891
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttga 169  Q
    ||||||| ||||||||||||  |||||||||||||||| | || ||| ||| ||||||  ||||||||||||| ||||    
T  55740968 caaatatgttcaattttatagtgtatatatgttataatgactaaaagtttgcatttttgcattttttggcaagcttga 55740891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 54603783 - 54603739
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  54603783 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaatctt 54603739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 39390496 - 39390449
Alignment:
Q  11 tgctcctaatttagaatgctcataaggtgtttgataaaatgcataagt 58  Q
    |||||||||||||||||||  |||||||||||||| |||||| |||||    
T  39390496 tgctcctaatttagaatgcagataaggtgtttgatgaaatgcctaagt 39390449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 55741058 - 55740995
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    ||||||| ||||  ||||||| ||||| | ||||||||||||| |||||| |||||||||||||    
T  55741058 actaattgtgctagtaatttataatgcacttaaggtgtttgatgaaatgcctaagtgagaaaat 55740995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 39390283 - 39390230
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgttgcatattact 315  Q
    ||||||||||||||||||||||||||||| ||| |  ||||||| ||| |||||    
T  39390283 agtgtggatttgtatgaatgcctaagtttaattattgatatgttacatgttact 39390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 8319122 - 8319013
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgt 191  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||    
T  8319122 caaatatgttcaattttataatgtatatatgttgtaattattataaacttggatttttaaattttttggcaagtttggagaatgacataatgtgatgtgt 8319023  T
Q  192 tatataaatg 201  Q
    ||||||||||    
T  8319022 tatataaatg 8319013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 20494895 - 20494848
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  20494895 attttttggcaagtttgatgaatgacataatgtggtatgttacataaa 20494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 44118781 - 44118735
Alignment:
Q  153 ttttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  44118781 ttttttggcaagtttgatgaatgacataatgtggtatgttacataaa 44118735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 20495050 - 20494993
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    
T  20495050 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcattttt 20494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 44118934 - 44118877
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    
T  44118934 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcattttt 44118877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 8319202 - 8319150
Alignment:
Q  14 tcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    |||||||||||||||| | ||||||||||||| |||||  |||||||||||||    
T  8319202 tcctaatttagaatgcacgtaaggtgtttgatgaaatgtctaagtgagaaaat 8319150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 23718314 - 23718246
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttac 71  Q
    ||||||||||||||||||||| ||||  | ||||||||||||| |||||| |||| |||| | ||||||    
T  23718314 actaattatgctcctaatttaaaatgtacttaaggtgtttgatgaaatgcctaagagagatattcttac 23718246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 23878272 - 23878318
Alignment:
Q  153 ttttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    ||||||||||||||||| |||||||||||||| | |||||| |||||    
T  23878272 ttttttggcaagtttgatgaatgacataatgttgcatgttacataaa 23878318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 8318990 - 8318937
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgttgcatattact 315  Q
    ||||||||||||||||||||||||||||| ||| |  ||||||| ||| |||||    
T  8318990 agtgtggatttgtatgaatgcctaagtttaattattgatatgttacatgttact 8318937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 20495118 - 20495074
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| |||||||| |||||||    
T  20495118 aatgcacataaggtgtttgatgaaatgcctaagtgaggaaatctt 20495074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 42098560 - 42098505
Alignment:
Q  126 taattattataagcttggatttttaaattttttggcaagtttgaagaatgacataat 182  Q
    ||||||||||||| | ||||||| | ||||||| |||||||| ||||||||||||||    
T  42098560 taattattataaggtcggattttgacatttttttgcaagttt-aagaatgacataat 42098505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 4172090 - 4172168
Alignment:
Q  123 ttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatg 201  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4172090 ttataattattataagcttggatttttaaattttttagcaagtttgaagaatgacataatgtggtatgttatataaatg 4172168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 40614251 - 40614147
Alignment:
Q  93 aaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgtt 192  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||    
T  40614251 aaatatgttcaattttataatgtatatatgttgtaattattataagcttgga---ttaaattttttgg-aagtttgaagaatgacataatgtggtatgtt 40614156  T
Q  193 atataaatg 201  Q
    |||||||||    
T  40614155 atataaatg 40614147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 26171939 - 26172029
Alignment:
Q  103 aattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgtta 193  Q
    |||||||| | ||||||||| |||||| ||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26171939 aattttatgatgtatatatgctataatgattctaagtttagatttttatattttttggcaagtttgaagaatgacataatgtggtatgtta 26172029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 34457519 - 34457596
Alignment:
Q  106 tttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||||||||||||||||    
T  34457519 tttataatgtatatatgttataattattataaggttggattttgacatttttttgcaagttt-aagaatgacataatgt 34457596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 29899575 - 29899729
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatcttacnnnnnnnnnnnnnnnnnnnncaaatatcttc 102  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||                    ||||||| |||    
T  29899575 actaattgtgctcctaatttagaatgcgcataaggtgtttgatgaaatgcctaagtgagaaaatgttac------------tttttttgcaaatatgttc 29899662  T
Q  103 aattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttga 169  Q
    |||||||||| |||||||||||||||| |||||||| ||| |||||| | |||||||||||| ||||    
T  29899663 aattttataatgtatatatgttataatgattataagtttgcattttttatttttttggcaaggttga 29899729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 40614342 - 40614281
Alignment:
Q  5 taattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaat 66  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||    
T  40614342 taattgtgctcctaatttagaatgcacataaggtgtttgatgaaatgcctaagtgagaaaat 40614281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 21831593 - 21831689
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttta----aattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || |||||||||| |||||||||||||||| ||| ||||||||||||||||      ||||||| |||||||||||||| |||||||||    
T  21831593 caaatatgttaaattttataatgtatatatgttataatgattctaagcttggatttttaccttttttttttgtcaagtttgaagaattacataatgt 21831689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 21831499 - 21831565
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||||| |||| |||||||||||||| | ||||||||||||| |||||| ||||||||| ||||||    
T  21831499 actaattctgctactaatttagaatgcacttaaggtgtttgatgaaatgcctaagtgagataatctt 21831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 40614124 - 40614071
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgttgcatattact 315  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||    
T  40614124 agtgtggatttgtatgaatgcctaagtttaattttttatatgttacatgttact 40614071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 31508971 - 31508893
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt-aaattttttggcaagtttga 169  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    |||||||||||||||||    
T  31508971 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcatttttgtttttttttggcaagtttga 31508893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 4172191 - 4172234
Alignment:
Q  262 agtgtggatttgtatgaatgcctaagtttcattttatatatgtt 305  Q
    ||||||||| |||||||||||||||||||||||||  |||||||    
T  4172191 agtgtggatatgtatgaatgcctaagtttcatttttgatatgtt 4172234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 31509040 - 31508996
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||| | ||||||||||||||||    
T  31509040 aatgcacataaggtgtttgatgaaattcctaagtgagaaaatctt 31508996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 42057949 - 42057871
Alignment:
Q  123 ttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgtggtatgttatataaatg 201  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42057949 ttataattactataaacttggatttttaaattttttggcaagtttgaagaataacataatgtggtatgttatataaatg 42057871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 46200694 - 46200603
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataatgt 184  Q
    ||||||| || ||| |||||| ||||||||||||||||||||| ||| ||||||||| | |||||||||||||||| ||||||||||||||||    
T  46200694 caaatatgttaaatcttataatgtatatatgttataattattaaaaggttggattttgacattttttggcaagttt-aagaatgacataatgt 46200603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 13706656 - 13706745
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgacataat 182  Q
    ||||||| || ||| |||||| |||||||||||||||||||||||||  |||||||| | |||||||||||||||| |||||||| |||||    
T  13706656 caaatatgttaaatcttataatgtatatatgttataattattataaggatggattttgacattttttggcaagttt-aagaatgagataat 13706745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 42464707 - 42464661
Alignment:
Q  153 ttttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  42464707 ttttttggcaagtttgatgaatgacataatgtggtatgttacataaa 42464661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 18240009 - 18240082
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttga 169  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| |||||    |||||||||||||||||    
T  18240009 caaatatattcaattttataatgtatgtatgttataatgattataagtttgcatttt----ttttttggcaagtttga 18240082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 18240164 - 18240212
Alignment:
Q  151 aattttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  18240164 aatttttttgcaagtttgatgaatgacataatgtggtatgttacataaa 18240212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 27108788 - 27108741
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    ||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  27108788 atttttttgcaagtttgatgaatgacataatgtggtatgttacataaa 27108741  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 31386036 - 31386083
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  31386036 attttttgacaagtttgatgaatgacataatgtggtatgttacataaa 31386083  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 15292308 - 15292251
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    
T  15292308 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcattttt 15292251  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 42058154 - 42058097
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    
T  42058154 caaatatgttcaattttataatgtatgtatgttataatgattataagtttgcattttt 42058097  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 42464854 - 42464797
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt 149  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||| ||| ||||||    
T  42464854 caaatatgttcaattttataatgtatgtatgttataataattataagtttgcattttt 42464797  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 18239941 - 18239985
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  18239941 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaatctt 18239985  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 42464922 - 42464878
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  42464922 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaatctt 42464878  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 31385817 - 31385855
Alignment:
Q  31 cataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  31385817 cataaggtgtttgatgaaatgcctaagtgagaaaatctt 31385855  T

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Target: scaffold1813 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 387 - 302
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggatttttaaattttttggcaagtttgaagaatgaca 178  Q
    ||||||| || ||| |||||| ||||||||| ||||||||||||||  ||||||||| | |||||||||||||||| ||||||||||    
T  387 caaatatgttaaatcttataatgtatatatgctataattattataaagttggattttgacattttttggcaagttt-aagaatgaca 302  T

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Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 140525 - 140467
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgag 61  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  140525 actaattatgctcttaatttaaaatgcacataaggtgtttgataaaatgtataagtgag 140467  T

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Target: scaffold0916 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 786 - 864
Alignment:
Q  92 caaatatcttcaattttataaagtatatatgttataattattataagcttggattttt-aaattttttggcaagtttga 169  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||| ||| ||||||    |||||||||||||||||    
T  786 caaatatgttcaattttataatgtatatatgttataatgattataagtttgcatttttgcttttttttggcaagtttga 864  T

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Target: scaffold0916; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 692 - 758
Alignment:
Q  3 actaattatgctcctaatttagaatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||||| ||||  ||||||||||||| | ||||||||||||| |||||| ||| ||||||||||||    
T  692 actaattgtgctagtaatttagaatgcacttaaggtgtttgatgaaatgcctaaatgagaaaatctt 758  T

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Target: scaffold0251 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 1409 - 1362
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  1409 attttttggcaagtttgatgaatgacttaatgtggtatgttacataaa 1362  T

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Target: scaffold0251; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 1640 - 1594
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatcttac 71  Q
    ||||| ||||||||||||||| |||||| |||||| |||||||||||    
T  1640 aatgcacataaggtgtttgatgaaatgcctaagtgcgaaaatcttac 1594  T

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Target: scaffold0184 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 28007 - 27960
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  28007 attttttggcaagtttgatgaatgacgtaatgtggtatgttacataaa 27960  T

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Target: scaffold0184; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 28232 - 28188
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  28232 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaatctt 28188  T

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Target: scaffold0078 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 44837 - 44884
Alignment:
Q  152 attttttggcaagtttgaagaatgacataatgtggtatgttatataaa 199  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||    
T  44837 attttttggcaagtttgatgaatgacgtaatgtggtatgttacataaa 44884  T

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Target: scaffold0078; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 44612 - 44656
Alignment:
Q  25 aatgctcataaggtgtttgataaaatgcataagtgagaaaatctt 69  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  44612 aatgcacataaggtgtttgatgaaatgcctaagtgagaaaatctt 44656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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