View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_27 (Length: 267)
Name: NF6328_low_27
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 42 - 267
Target Start/End: Original strand, 11406082 - 11406308
Alignment:
| Q |
42 |
taaataaatataatgacgaaagaagaaaaaacgtatgagaataagagcattaaacatccagtccaattaattaataatttctcttatccgataaacaatc |
141 |
Q |
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| T |
11406082 |
taaatacatataatgagaaaagaagaaaa-acgtatgagattaagagcattaaacatccagtccaattaattaataatttctcttatccgataaacaatc |
11406180 |
T |
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| Q |
142 |
aagtcaatggatttttcttcacatatcaagattaggtaaaaggcaaaatggctcc--atatatatctctattaactaacttgcatgtgtaatgtttgaaa |
239 |
Q |
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| T |
11406181 |
aagtcaatggatttttctttacatatcaagattaggtaaaaggcaaaatggctccatatatatatctctattaactaacttgcatgtgtaatgtttgaaa |
11406280 |
T |
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| Q |
240 |
gtttatgtatgtgaattattacattaca |
267 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11406281 |
gtttatgtatgtgaattattacattaca |
11406308 |
T |
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