View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_3 (Length: 593)
Name: NF6328_low_3
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Complemental strand, 43759285 - 43758807
Alignment:
| Q |
16 |
catcatctgaaactcacacatacgactgttatatttcggaattaagttgaataaaaatgtttggtttaatatatttgttacttgagttaggttttacggg |
115 |
Q |
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| T |
43759285 |
catcatctgaaattcacacatacaactgttatatctcgaaattaagtcgaataaaaatgttgggtttaatatatttgttagttgagttaggttttacggg |
43759186 |
T |
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| Q |
116 |
caactaagataagtcgatgatatgacacaaaggaaaataaattaatttgcatataccttggtgcttctaatgcagctagcactttctttgtatgccccaa |
215 |
Q |
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| T |
43759185 |
caactaaaataagtcgatgatatgacacaaaggaaaataaattaatttgcatataccttggtgcttctaatgcagctagcactttctttgtatgccccaa |
43759086 |
T |
|
| Q |
216 |
gctaggagttctttctctgaaaggctatctagattataactctttttagtatagggggttacagaaaaaagaaacctcttttaaattgagcttgtccttt |
315 |
Q |
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| T |
43759085 |
gctaggagttctttctctgaaaggctatctagattataactctttttagtatagggggttacagaaaaaagaaacttcttttaaattgagcttgtccttt |
43758986 |
T |
|
| Q |
316 |
tgagtggatttttcaactacaagtcataactagaaactcacgtgacccagttgattcaagtgcaacccaaccaaggcaggtaaataggggacccgtgtaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43758985 |
tgagtggatttttcaactacaagtcataactagaaactcacgtgacccagttgattcaagtgcaacccaaccaaggcaggtaaataggggacccgtgtaa |
43758886 |
T |
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| Q |
416 |
gttagtccattcaatttcagacaccgaagaaaatatcctcttcttacttaattggaattcaagatggtaatttagagag |
494 |
Q |
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| T |
43758885 |
gttagtccattcaatttcaaacaccgaagaaaatatcctcttctcacttaattggaattcaagatggtaatttagagag |
43758807 |
T |
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