View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6328_low_30 (Length: 252)
Name: NF6328_low_30
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 49271335 - 49271561
Alignment:
| Q |
14 |
aacctgtgcttttctatcagttttcattttcagcacttgtttaaaccatagtgctggaagatatggaaaaaggtttgtcaaagaaagacaaa-gagggag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49271335 |
aacctgtgcttttctatcagttttcattttcagcacttgtttaaaccatagtgctggaagatatggaaaaaggtttgtcaaagaaagacaaaagagggag |
49271434 |
T |
|
| Q |
113 |
aggatggttcaggcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271435 |
aggatggttcaggcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattt |
49271534 |
T |
|
| Q |
213 |
tctacaaattatttcaatgatgatggt |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
49271535 |
tctacaaattatttcaatgatgatggt |
49271561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 49254728 - 49254893
Alignment:
| Q |
74 |
atatggaaaaaggtttgtcaaagaaagacaaagagggagaggatggttcagg---catatcatggggtgtgtttgttcaagaggtagaagatgttggttt |
170 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||| | ||||||| | |||| |||||||||| ||| |||||||||| |||||||| |||| |
|
|
| T |
49254728 |
atatggaaaaaggtttgttagagaaagacagagagggtgc---tggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttt |
49254824 |
T |
|
| Q |
171 |
tctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggt |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254825 |
tctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggt |
49254893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 49274761 - 49274683
Alignment:
| Q |
161 |
atgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggt |
239 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggt |
49274683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 49267041 - 49267155
Alignment:
| Q |
125 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
224 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
49267041 |
gcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattat |
49267140 |
T |
|
| Q |
225 |
ttcaatgatgatggt |
239 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
49267141 |
ttcaatgataatggt |
49267155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University