View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_31 (Length: 248)
Name: NF6328_low_31
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18303689 - 18303460
Alignment:
| Q |
1 |
cggcatcattacatcctttccacgagcattatagcgctggtagagattcggatgtttagagtcaaactcaatgaagctagggtgttgaatcttgtacttg |
100 |
Q |
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| T |
18303689 |
cggcatcattacatcctttccacgagcattatagcgctggtagagattcggatgtttagagtcaaactcaatgaagctagggtgttgaatcttgtacttg |
18303590 |
T |
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| Q |
101 |
attaaggactctacccgattttcaaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaaggcaaagtattggttat |
200 |
Q |
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| T |
18303589 |
tttaaggactctacccgatattcaaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaaggcaaagtattggttat |
18303490 |
T |
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| Q |
201 |
gtgggtcatccaatagagcagtggctaaga |
230 |
Q |
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| T |
18303489 |
gtgggtcatccaatagagcagtggctaaga |
18303460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 18340132 - 18340214
Alignment:
| Q |
117 |
gattttcaaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaaggcaaagtattggtta |
199 |
Q |
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| T |
18340132 |
gatttttaaaaaggtagttataaacgaatcgaaacgacaagagcggaacacagtgttgagaaactagggcaaagtattggtta |
18340214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 18345290 - 18345383
Alignment:
| Q |
117 |
gattttcaaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaag-gcaaagtattggttatgtgggtcatc |
210 |
Q |
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| T |
18345290 |
gatttttaaaaaggtagttataaatgaattgaaatgagaagagtggaatacaacgttgggaga-taagtgcaaagtattggttcagtgggtcatc |
18345383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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