View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_32 (Length: 248)
Name: NF6328_low_32
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 42754790 - 42754633
Alignment:
| Q |
89 |
aaaactggttgttattcaattcaccttcatagttcattcaatacagtattg-----gtggcacgttgcaaaa-atggtgatagtggttttggactttgat |
182 |
Q |
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| T |
42754790 |
aaaactggttgttattcaattcaccttcatagttcattcaatacagtattgagtgagttgtagattgctggctatggtgatagtggttttggactttgat |
42754691 |
T |
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| Q |
183 |
cgtaccattatcgacgacgacagtgatagatgggtgatcaaccaaatgggtctctctg |
240 |
Q |
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| T |
42754690 |
cgtaccattatcgacgacgacagtgacagatgggtgatcaaccaaatgggtctctctg |
42754633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 42755190 - 42755108
Alignment:
| Q |
4 |
aattaaatatgaaatttagagggattaaaacaaaagttataatatttaaacctaccaaaacatatttaacccaaattatataa |
86 |
Q |
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| T |
42755190 |
aattaaatatgaaatttagagggattaaaacaaaagttataatatttaaacctaccaaaacatatttaacccaaattatataa |
42755108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 48874772 - 48874708
Alignment:
| Q |
15 |
aaatttagagggattaaaacaaaa-gttataatatttaaacctaccaaaacatatttaacccaaa |
78 |
Q |
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| T |
48874772 |
aaatttagagggatcaaaacaaaaagttagtatatttataaggaccaaaacatatttaacccaaa |
48874708 |
T |
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