View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_34 (Length: 244)
Name: NF6328_low_34
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 2098264 - 2098048
Alignment:
| Q |
9 |
gaagaatatgaaactaaatgaattcagagaagcctttcttttgtctaggaaggggatagttccatggttgttttaacaaagaaatcgtgtcattgctcag |
108 |
Q |
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| T |
2098264 |
gaagaatatgaaactaaatgaattcagagaagcctttcttttttctaggaaggggatagttccatggttgttttaacaaagaaatcgtgtcatcgctcag |
2098165 |
T |
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| Q |
109 |
aattatcgaatcaccatgtatcttttttatgaacaattggattatgttttccatatatcaacattcaaatgtactgtaattttaagttaaagataataat |
208 |
Q |
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| T |
2098164 |
aattatcgaatcaccatgtatcttttttatgaacaattggattatgttttcc--atatcaacattcaaatgtactgtaattttaagttaaagataataat |
2098067 |
T |
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| Q |
209 |
gcatactctatgaacatac |
227 |
Q |
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||||||||||||||||||| |
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| T |
2098066 |
gcatactctatgaacatac |
2098048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 2106718 - 2106582
Alignment:
| Q |
14 |
atatgaaactaaatgaattcagagaagcctttcttttgtct----aggaaggggatagttccatggttgtttt-aacaaagaaatcgtgtcattgctcag |
108 |
Q |
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|||| |||||||||||||||| || ||||||| |||| | | | ||| ||||||||||||| |||||||| |||||||||||| |||||| ||| || |
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| T |
2106718 |
atataaaactaaatgaattcaaaggagccttttttttttttttttaagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttag |
2106619 |
T |
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| Q |
109 |
aattatcgaatcaccatgtatcttttttatgaacaat |
145 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
2106618 |
aattatcaaatcaccatgtatcttttttatgaacaat |
2106582 |
T |
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